Report for Sequence Feature Glyma04g04780
Feature Type: gene_model
Chromosome: Gm04
Start: 3545380
stop: 3553189
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g04780
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G27752 AT
Annotation by Michelle Graham. TAIR10: Ubiquitin system component Cue protein | chr1:9662250-9667318 FORWARD LENGTH=873
SoyBase E_val: 0 ISS
KOG4501
KOG
Transcription coactivator complex, P100 component
JGI ISS
PTHR21494 Panther
ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 (ASC-1 COMPLEX SUBUNIT P100)
JGI ISS
PF02845 PFAM
CUE domain
JGI ISS
UniRef100_B3H6L4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin system component Cue protein n=1 Tax=Arabidopsis thaliana RepID=B3H6L4_ARATH
SoyBase E_val: 0 ISS
UniRef100_I1JTQ4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTQ4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g04780
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g04780
Paralog Evidence Comments
Glyma06g04860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g04780 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g045100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g04780
Coding sequences of Glyma04g04780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g04780.1 sequence type=CDS gene model=Glyma04g04780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGAATCGATCTAGTCAGGGTAGACAACATGACAACAATAACAACAAGGGTTTCGCCAAAACCCATAATCAGAAGAAATTCGTCCCCAAAAACCAAAGTCAAAATCCCAATCCTAACCCAACTCCAACCCTCTCAACCTCCCTCAGACAAACACAACCAAACAGAGGGCAGAAGGGGAATTTCGTTAAATACTTGCCGCAAGACGAAGCTGTGGCAGCGGGTCTCGGCGCCGAAGATGGAGCATTGGATCCCCTCGAATCTCAGAGAGTCGTAGATCTTTTGAACACACAGCTATCTCGCTTGCTCAAGTTGAAACCCAAGCAATTCTGGACACAAGTGGCTACTGACACCTCCCTGCATGAGCTTTTGGACAGCTTCTTGCAGTTCAGGAGCAGGTGGTATGATTTCCCTCATCGCGGGGTGCAAGGGATTGTTGCCGGTGTTATTGTTGGGGAGCTCGAGTTGAGTCGCCGCGTTTTCATGGTATTGTATCGCATTTCTTCGAATAAAGACCCCGGTGCACGACCTGTGGATGCTCTCAGTTTGAGAGACCATGAAGTTCTTTTGCAGGAGAAGAAGTTGCTTGAATTGCCGAAGTTGTTGGATATATGTGCCATATACCATCATGAAAATGAAGAACTGACAAGATCACTGGTTAGAAATTCTTTGAATGCTCAGCCTTGGATCCATAATAATCTGACTGCAGTAATATCCCATTTTCTAGGAATTGTCAGCACAATGCATGAACGTTGTAGTTCATCATTGGAGGTCTTGTTTTCTTCTGGAAACTTCGATCACCATAATGCTGCTTTTCTTCAAGCTGATCTGCTGGAGGTAATGGACTTTATAAATGATGCAATTGTATCAATGGACTCTTTTGTTAGTGTATACGAACCAGCAGCTGTTTTCTTCTCTTGCCCAGTAGAAATGAGTTATGGGAATGAGGAACTGCTGAGCCTCCTTGCCAGATTGCATGATTCACTAATTCCATCATTGCAAAAGGGATTCCGTGTGATTTTTGCTGACAAACAAGATGATACAGTATCTAATGTCTTAGTAAGTTTGAAGATGTTAAAAATTAGATTGGTGAAGTTTGGTTGGCAACTATTGCACTTGTGCTATCTAAGTGATGAAGTGTTCAGAGATAGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAATGTAGAGGACCCAGTCATCAGAGCAGATATTCTGGTTCAAACATTTAGAGAGATCAATTCGATATCATTACATTCTCAGGAAAGCCATCTGAAGGAAACATTTCTTCAAGATGTTGAAAGAAATTTCAATATACTAAGCAGGATTGAGAGATTAAGGGATGGTGGATGGATATTCATTGATGATGAACAGTTTCAATATATATCTGGGATGTTGAGTTCTGTTTATAAGGAGCCGTATTCTGCCTCAACCCCTGCGCCAAACCAAACATTGCTGATGGATGAAGATGCTGCAATTTCAGAGTCAAACATCAGTCAGATTAGGGACCTGTTCCCTGATTATGGTAAAGGTTTTTTAGCTGCGTGTCTTGAGGTCTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGGAACCCTTCATGAAGATCTGCAGAACATGGACACCTCACTAGAGACATTGCCACCAGCCAAGTCTACCACTGTGGGTGGGAATGATAAAGGAAAAGGTAAGTTAATTGATTCTACGCCAGCATCCTCAAATCCAGAAGTTGTTAGGGGGAAGCAACAGGCAGAGGGCCCAGTGATGTCATCCTCTGCTTCACTGGGAAAATTTGTGAGGAAATCTAGAGCTGACTTGCCTGATCGCAGTATTCTGGATAAAAAGGATGAAAAAGATACATCAAGAACTGCTGCTATGATTTTACAATATGAATATGAAGATGAGTATGATGACTCTTTTGATGACTTGGGTCTAAGTGTAGCAGATTCTGGAGTAGAAGAAAATGAGACACTGGGTGACCAAATAAACGCAAAGTCAGGGAATTCGTGGGCAACAGGGAGTGGAAACTCTGTCAAAAATGCCCCTGATTCAAAATGGGGCTCCAGGAAAAAGCCGCAGTACTATGTCAAGGATGGTAAGAACTACAGCTACAAAGTGGCTGGTGCAGTAGCAGTGGCAAATTCTGATGAAGCTTCGTTAATAACGCAAGCTCAGAAAGAATTGATACATGGCCTTGGACGTGGTGGCAACCTTCCTCTTGACGCGGTAAAGAAAGTGACTGATTCCTACAAGGAGGATGATAACCAATCCCAGGTTTCTGAAATGGAAGGGAGAGGGATTTCGGGCAATTCGTTTGGTAGGGGAAGGAAGGAAGGTGGAAAACAAGTTTCATCTCATCAGCAACAGGAGAAACAATCCGATGATTCCGAGGTGGATAGCAATAATCAAAGGGGGAGAGGGAGAGGAAGAGGGAGGGGAAGGGGAGGAGGAAGAAACAATCATTACCAGAAGGACCGAGCCATGAAGAAGCATTTCTCTGGAATGAGTGGTTATTAA
Predicted protein sequences of Glyma04g04780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g04780.1 sequence type=predicted peptide gene model=Glyma04g04780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNRSSQGRQHDNNNNKGFAKTHNQKKFVPKNQSQNPNPNPTPTLSTSLRQTQPNRGQKGNFVKYLPQDEAVAAGLGAEDGALDPLESQRVVDLLNTQLSRLLKLKPKQFWTQVATDTSLHELLDSFLQFRSRWYDFPHRGVQGIVAGVIVGELELSRRVFMVLYRISSNKDPGARPVDALSLRDHEVLLQEKKLLELPKLLDICAIYHHENEELTRSLVRNSLNAQPWIHNNLTAVISHFLGIVSTMHERCSSSLEVLFSSGNFDHHNAAFLQADLLEVMDFINDAIVSMDSFVSVYEPAAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFRVIFADKQDDTVSNVLVSLKMLKIRLVKFGWQLLHLCYLSDEVFRDSIPLPAATKMFPANVEDPVIRADILVQTFREINSISLHSQESHLKETFLQDVERNFNILSRIERLRDGGWIFIDDEQFQYISGMLSSVYKEPYSASTPAPNQTLLMDEDAAISESNISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEGTLHEDLQNMDTSLETLPPAKSTTVGGNDKGKGKLIDSTPASSNPEVVRGKQQAEGPVMSSSASLGKFVRKSRADLPDRSILDKKDEKDTSRTAAMILQYEYEDEYDDSFDDLGLSVADSGVEENETLGDQINAKSGNSWATGSGNSVKNAPDSKWGSRKKPQYYVKDGKNYSYKVAGAVAVANSDEASLITQAQKELIHGLGRGGNLPLDAVKKVTDSYKEDDNQSQVSEMEGRGISGNSFGRGRKEGGKQVSSHQQQEKQSDDSEVDSNNQRGRGRGRGRGRGGGRNNHYQKDRAMKKHFSGMSGY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
