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Report for Sequence Feature Glyma04g04770

Feature Type:gene_model
Chromosome:Gm04
Start:3539471
stop:3544192
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27450AT Annotation by Michelle Graham. TAIR10: adenine phosphoribosyl transferase 1 | chr1:9532042-9533807 FORWARD LENGTH=243 SoyBaseE_val: 7.00E-108ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006168GO-bp Annotation by Michelle Graham. GO Biological Process: adenine salvage SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009116GO-bp Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003999GO-mf Annotation by Michelle Graham. GO Molecular Function: adenine phosphoribosyltransferase activity SoyBaseN/AISS
KOG1712 KOG Adenine phosphoribosyl transferases JGI ISS
PTHR11776Panther PHOSPHORIBOSYLTRANSFERASE JGI ISS
PF00156PFAM Phosphoribosyl transferase domain JGI ISS
UniRef100_C6SWN0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SWN0_SOYBN SoyBaseE_val: 3.00E-169ISS
UniRef100_D3YBB6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Adeninephosphoribosyl transferase n=1 Tax=Trifolium repens RepID=D3YBB6_TRIRP SoyBaseE_val: 4.00E-111ISS

Expression Patterns of Glyma04g04770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04770
ParalogEvidenceComments
Glyma06g04850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g045000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g04770
>Glyma04g04770.2   sequence type=transcript   gene model=Glyma04g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATATATTAAATTGTATTGAGCAATAAAGCAGAATTAATGTTTAGTTTGTGTGGAAATGAAAAAAGTGACAAGAAGTGAAGAGAATGCGGGTTGTTTGTTGTTCCAATTCAGGCGTGAGTGCTTTCCCTAGTTGTCTTAGATTCCCTCCACTGATCGCAATTTCAACAACACCCTCTTCGATCCGCTTTCTAAATTCTCCACCCCTCCGTTCCACTGCTTCGTGTAATTTCCATTCAACATCTCTCTCTCCAATCTTCAATCTTCAATCTTCAATCGCGACTATTCTAACATAATACGATTTCTTCGTTTGTGTTTGGTTGCGCAGCGCAACACGTTACAATAATGGCTTCGAAGAATTCTCAACAAGACACGCGCTTAGCGAGAATCGCCTCTGCAATCCGAGTCATCCCCGACTTTCCTAAGCCAGGAATTTTGTTTCAGGACATAACCACGCTGCTTCTTGATACAAAGGCTTTCAAAGACACCATTGACTTGTTTGTTGAGAGGTACAGAGATCAAAACATCAATGTTGTCGCAGGAGTTGAAGCTAGAGGCTTTATATTTGGTCCACCCATTGCATTAGCTATTGGAGCAAAATTTGTCCCCATGAGGAAACCCAATAAATTGCCTGGGGAGGTTATCTCAGAAGAGTATTCTTTGGAGTATGGAACAGACAAAATGGAGATGCATGTAGGGGCTGTACAACCTGGAGAACGAGCCCTAATCATAGATGATCTTATTGCCACTGGGGGAACGTTAGGTGCTGCAATTAAGCTTCTAGAACGTGTTGGGGTGCATGTTGTGGAGTGTGCTTGTGTGATTGAATTGCCAGAGTTAAAGGGGCGGGAAAGGTTGGGAGACAAGTCGCTATTTGTCTTGATTAATGGGGGAGCCTGATCTTTTTTCCAAGTGATTGTGTTTTTATTAGCTGGCTCTTGTTAGGAGCTTTATTGATGACTGCTTAGATTTCCTTAAGATACATTTTGATGCTGCGGAAACGGAAAGCGTGCTTTGTTTGAGCGCGCTCAGTTCTGCTCAATTATTATTATTATTATCTTCTGTGAGTCCCGTTTGGTAATGACGATTGAGAGAACGATGGCTATAATATAGGACTTGCTTGCCACTTGGCTGCGGAACATCCTAAGTGGCTAAGGTTTACTGAAAGGAACGGAACTCCATCTGATGCTCAATTGGACTGTGCTTTCCCTGTTTCCTTAAAACTGATATGCTCTTAACGTATAGCCACAAATATGCACTAGCCTTTAAGCCACCATCAAATTAATTTAATTAATCACTTCGTGCTTAAATTTAAATATTATAAATCGCACG
Coding sequences of Glyma04g04770
>Glyma04g04770.1   sequence type=CDS   gene model=Glyma04g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGGTTGTTTGTTGTTCCAATTCAGGCGTGAGTGCTTTCCCTAGTTGTCTTAGATTCCCTCCACTGATCGCAATTTCAACAACACCCTCTTCGATCCGCTTTCTAAATTCTCCACCCCTCCGTTCCACTGCTTCGTCGCAACACGTTACAATAATGGCTTCGAAGAATTCTCAACAAGACACGCGCTTAGCGAGAATCGCCTCTGCAATCCGAGTCATCCCCGACTTTCCTAAGCCAGGAATTTTGTTTCAGGACATAACCACGCTGCTTCTTGATACAAAGGCTTTCAAAGACACCATTGACTTGTTTGTTGAGAGGTACAGAGATCAAAACATCAATGTTGTCGCAGGAGTTGAAGCTAGAGGCTTTATATTTGGTCCACCCATTGCATTAGCTATTGGAGCAAAATTTGTCCCCATGAGGAAACCCAATAAATTGCCTGGGGAGGTTATCTCAGAAGAGTATTCTTTGGAGTATGGAACAGACAAAATGGAGATGCATGTAGGGGCTGTACAACCTGGAGAACGAGCCCTAATCATAGATGATCTTATTGCCACTGGGGGAACGTTAGGTGCTGCAATTAAGCTTCTAGAACGTGTTGGGGTGCATGTTGTGGAGTGTGCTTGTGTGATTGAATTGCCAGAGTTAAAGGGGCGGGAAAGGTTGGGAGACAAGTCGCTATTTGTCTTGATTAATGGGGGAGCCTGA

>Glyma04g04770.2   sequence type=CDS   gene model=Glyma04g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGAAGAATTCTCAACAAGACACGCGCTTAGCGAGAATCGCCTCTGCAATCCGAGTCATCCCCGACTTTCCTAAGCCAGGAATTTTGTTTCAGGACATAACCACGCTGCTTCTTGATACAAAGGCTTTCAAAGACACCATTGACTTGTTTGTTGAGAGGTACAGAGATCAAAACATCAATGTTGTCGCAGGAGTTGAAGCTAGAGGCTTTATATTTGGTCCACCCATTGCATTAGCTATTGGAGCAAAATTTGTCCCCATGAGGAAACCCAATAAATTGCCTGGGGAGGTTATCTCAGAAGAGTATTCTTTGGAGTATGGAACAGACAAAATGGAGATGCATGTAGGGGCTGTACAACCTGGAGAACGAGCCCTAATCATAGATGATCTTATTGCCACTGGGGGAACGTTAGGTGCTGCAATTAAGCTTCTAGAACGTGTTGGGGTGCATGTTGTGGAGTGTGCTTGTGTGATTGAATTGCCAGAGTTAAAGGGGCGGGAAAGGTTGGGAGACAAGTCGCTATTTGTCTTGATTAATGGGGGAGCCTGA
Predicted protein sequences of Glyma04g04770
>Glyma04g04770.1   sequence type=predicted peptide   gene model=Glyma04g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVVCCSNSGVSAFPSCLRFPPLIAISTTPSSIRFLNSPPLRSTASSQHVTIMASKNSQQDTRLARIASAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYRDQNINVVAGVEARGFIFGPPIALAIGAKFVPMRKPNKLPGEVISEEYSLEYGTDKMEMHVGAVQPGERALIIDDLIATGGTLGAAIKLLERVGVHVVECACVIELPELKGRERLGDKSLFVLINGGA*

>Glyma04g04770.2   sequence type=predicted peptide   gene model=Glyma04g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKNSQQDTRLARIASAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYRDQNINVVAGVEARGFIFGPPIALAIGAKFVPMRKPNKLPGEVISEEYSLEYGTDKMEMHVGAVQPGERALIIDDLIATGGTLGAAIKLLERVGVHVVECACVIELPELKGRERLGDKSLFVLINGGA*






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