Glyma04g04750 - SoyBase

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Report for Sequence Feature Glyma04g04750

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3526684
stop:	3527535
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37540	AT	Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 39 \| chr4:17639649-17640509 REVERSE LENGTH=240	SoyBase	E_val: 1.00E-45	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_G7K3V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K3V2_MEDTR	SoyBase	E_val: 8.00E-48	ISS
UniRef100_I1JTQ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTQ2_SOYBN	SoyBase	E_val: 9.00E-109	ISS

Expression Patterns of Glyma04g04750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g04750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g044800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04750

Limit To All Plant Sequences

>Glyma04g04750.1   sequence type=CDS   gene model=Glyma04g04750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTTCCTCTATGATAAAGATTCCCCGAGGCAGCAAAAAAGAAAAAGCATGAGCTGCAATGGTTGCCGAGTCCTCCGCAAAAGATGCAGCGAGAGGTGCAGCCTGAGATCCTCCCTGAACTGGATCGATTGTCCGCATGCACAGGCCCATGCAACTCTCTTCCTGGCTAAGTTCTTCGGCCGTAGCGACCTCATGTTTTTCATCTCCTCCGTCCCACTAAACAACAGACCCGCGTGCGGACGGACCGTTAATCCCGTTAACGGTGCCGTCGGACTCCTGCTGAGCGGTAACTGGCACGTGTGCCAGGCCGCCGTCCACACGGTGCTCGCCGGAGGCGTTCTCCGGCCGCTGTCGGAGGTTGTGGCGCCATCAGAAAGCATGTTCTCTCATCAGTTCCAGTCTCTGGCGTCAGATTCTTTGAAGAGAAGCAGCGATGCAACAGCACCGGTTATGTCGACCATGGTTTCTGGAGAATCAGAGATTTGCAGCAGCGACGATGGGAAAAAGCTTTTGAATCTGTTCGTCTAG

Predicted protein sequences of Glyma04g04750

Limit To All Plant Sequences

>Glyma04g04750.1   sequence type=predicted peptide   gene model=Glyma04g04750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFLYDKDSPRQQKRKSMSCNGCRVLRKRCSERCSLRSSLNWIDCPHAQAHATLFLAKFFGRSDLMFFISSVPLNNRPACGRTVNPVNGAVGLLLSGNWHVCQAAVHTVLAGGVLRPLSEVVAPSESMFSHQFQSLASDSLKRSSDATAPVMSTMVSGESEICSSDDGKKLLNLFV*

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