Glyma04g04730 - SoyBase

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Report for Sequence Feature Glyma04g04730

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3501117
stop:	3504221
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67360	AT	Annotation by Michelle Graham. TAIR10: Subtilase family protein \| chr5:26872192-26874465 REVERSE LENGTH=757	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0010214	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed coat development	SoyBase	N/A	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0048359	GO-bp	Annotation by Michelle Graham. GO Biological Process: mucilage metabolic process involved seed coat development	SoyBase	N/A	ISS
GO:0080001	GO-bp	Annotation by Michelle Graham. GO Biological Process: mucilage extrusion from seed coat	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR10795	Panther	SUBTILISIN/KEXIN-RELATED SERINE PROTEASE	JGI		ISS
PTHR10795:SF17	Panther	gb def: possible protease [sinorhizobium meliloti]	JGI		ISS
PF00082	PFAM	Subtilase family	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF05922	PFAM	Peptidase inhibitor I9	JGI		ISS
UniRef100_D3YBD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteinase inhibitor n=1 Tax=Trifolium repens RepID=D3YBD3_TRIRP	SoyBase	E_val: 0	ISS
UniRef100_UPI000189D7D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D7D8 related cluster n=1 Tax=unknown RepID=UPI000189D7D8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04730

Paralog	Evidence	Comments
Glyma06g04810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g044600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04730

Limit To All Plant Sequences

>Glyma04g04730.1   sequence type=CDS   gene model=Glyma04g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACAAGATGAATATGCTGATATTCAAGTCCCTTCAGATTTCTTTGCTGCTAGTTTTCTCTATCAGAAACACCACAGCAGAAAAGAAAACCCATCACACAAAACACACATACATAATTCACATGGACAAGTTCAACATGCCAGAGAGTTTTAACGACCATCTCCTCTGGTTTGATTCATCACTAAAATCAGTATCAGACTCAGCAGAGATGCTCTACACATATAAAAAAGTAGCTCATGGCTTCTCTACAAGGCTAACTACGCAAGAAGCAGAGTTGCTCTCAAAGCAACCTGGTGTTCTCTCCGTCATCCCGGAAGTTAGATATGATCTTCACACAACTCGAACACCAGAGTTTCTGGGGTTGGCCAAATACAGCACTCTTTCACTGGCCTCTGGCAAACAAAGCGATGTGATTGTCGGAGTGCTAGACACTGGTGTGTGGCCTGAACTAAAGAGCTTCGACGACACCGGACTGGGGCCAGTACCTAGTAGCTGGAAAGGTGAGTGTGAGAGAGGTAAGAATTTCAACCCATCAAACTGTAATAAGAAACTTGTTGGTGCAAGGTTTTTCTCGAGGGGCTACGAGGCAGCCTTTGGACCCATCGACGAAAAGACGGAATCAAAGTCACCAAGGGATGATGATGGCCACGGAAGTCACACCTCAACAACGGCAGCAGGTTCTGCAGTTGTAGGAGCAAGCCTCTTTGGTTTTGCTAATGGGACAGCAAGAGGCATGGCCACACAAGCCAGACTTGCAACTTACAAAGTGTGTTGGCTTGGAGGGTGCTTTACATCAGACATAGCTGCTGGAATTGACAAGGCCATTGAAGATGGTGTCAACATCCTTTCCATGTCAATTGGGGGAGGTTTGATGGATTACTACAAAGACACTATTGCAATTGGAACTTTTGCGGCCACTGCCCATGGAATACTGGTTTCCAATTCAGCAGGAAATGGTGGGCCTAGTCAAGCAACTTTGTCTAATGTGGCACCATGGCTAACCACAGTGGGTGCGGGAACTATAGACCGTGATTTCCCTGCCTATATCACCCTTGGAAATGGAAAGATGTACACAGGGGTGTCACTTTACAATGGCAAACTCCCACCCAATTCTCCACTGCCAATTGTTTATGCTGCAAATGTAAGCGATGAATCCCAAAATCTGTGCACCAGAGGTACTTTGATTGCTGAAAAAGTAGCCGGAAAAATCGTGATATGTGACCGAGGAGGGAATGCTAGGGTGGAAAAGGGTTTGGTGGTGAAGAGTGCTGGAGGCATTGGGATGATACTATCAAACAATGAAGACTATGGGGAAGAGTTAGTTGCTGACTCCTATCTCCTCCCTGCAGCAGCTTTGGGCCAGAAATCAAGCAATGAGTTAAAGAAGTATGTTTTCTCATCTCCCAATCCCACAGCTAAGCTTGGATTTGGTGGCACCCAATTAGGGGTTCAACCATCCCCAGTGGTGGCAGCTTTCAGCTCAAGAGGGCCAAATGTGCTCACACCAAAAATACTCAAACCAGACCTGATTGCTCCAGGAGTCAACATCCTAGCTGGGTGGACTGGTGCAGTTGGACCAACTGGCTTGACTGAAGACACCAGACATGTGGAATTCAACATCATTTCAGGCACTTCCATGTCCTGCCCCCATGTCACTGGCTTAGCTGCCCTTCTTAAGGGCACTCACCCAGAATGGAGCCCTGCAGCTATAAGGTCTGCCCTCATGACCACAGCTTACAGAACCTACAAAAATGGCCAAACCATAAAAGATGTCGCCACCGGGCTACCGGCTACGCCATTTGATTATGGGGCCGGACACGTTGATCCAGTGGCTGCGTTTGATCCTGGTCTTGTGTATGATACTTCCGTGGATGACTACTTGAGCTTCTTCTGTGCCTTAAACTACAGTTCCTATCAAATAAAGCTTGTTGCAAGAAGAGACTTCACCTGCAGCAAAAGGAACAATTACAGAGTGGAAGATCTCAATTACCCATCTTTTGCTGTTCCTTTCAACACAGCTTATGGAGTAAAGGGTGGTTCTCGCAAACCAGCCACTGTCCAATATACAAGGACTTTAACAAACGTGGGTGCCCCGGCAACGTATAAAGTTTCGGTGTCGCAGTCTCCCTCGGTGAAGATTATGGTTCAACCACAAACACTTAGTTTCGGGGGACTTAATGAGAAGAAGAACTACACAGTTACGTTCACGTCTTCGTCAAAGCCTTCTGGAACAAACAGCTTTGCTTATCTGGAATGGTCGGATGGGAAACATAAGGTTACTAGTCCCATTGCTTTCAGCTGGACTTAG

Predicted protein sequences of Glyma04g04730

Limit To All Plant Sequences

>Glyma04g04730.1   sequence type=predicted peptide   gene model=Glyma04g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDKMNMLIFKSLQISLLLVFSIRNTTAEKKTHHTKHTYIIHMDKFNMPESFNDHLLWFDSSLKSVSDSAEMLYTYKKVAHGFSTRLTTQEAELLSKQPGVLSVIPEVRYDLHTTRTPEFLGLAKYSTLSLASGKQSDVIVGVLDTGVWPELKSFDDTGLGPVPSSWKGECERGKNFNPSNCNKKLVGARFFSRGYEAAFGPIDEKTESKSPRDDDGHGSHTSTTAAGSAVVGASLFGFANGTARGMATQARLATYKVCWLGGCFTSDIAAGIDKAIEDGVNILSMSIGGGLMDYYKDTIAIGTFAATAHGILVSNSAGNGGPSQATLSNVAPWLTTVGAGTIDRDFPAYITLGNGKMYTGVSLYNGKLPPNSPLPIVYAANVSDESQNLCTRGTLIAEKVAGKIVICDRGGNARVEKGLVVKSAGGIGMILSNNEDYGEELVADSYLLPAAALGQKSSNELKKYVFSSPNPTAKLGFGGTQLGVQPSPVVAAFSSRGPNVLTPKILKPDLIAPGVNILAGWTGAVGPTGLTEDTRHVEFNIISGTSMSCPHVTGLAALLKGTHPEWSPAAIRSALMTTAYRTYKNGQTIKDVATGLPATPFDYGAGHVDPVAAFDPGLVYDTSVDDYLSFFCALNYSSYQIKLVARRDFTCSKRNNYRVEDLNYPSFAVPFNTAYGVKGGSRKPATVQYTRTLTNVGAPATYKVSVSQSPSVKIMVQPQTLSFGGLNEKKNYTVTFTSSSKPSGTNSFAYLEWSDGKHKVTSPIAFSWT*

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