Glyma04g04720 - SoyBase

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Report for Sequence Feature Glyma04g04720

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3497880
stop:	3500364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65860	AT	Annotation by Michelle Graham. TAIR10: ankyrin repeat family protein \| chr5:26347706-26348686 REVERSE LENGTH=326	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
KOG1709	KOG	Guanidinoacetate methyltransferase and related proteins	JGI		ISS
PTHR15047	Panther	GUANIDINOACETATE N-METHYLTRANSFERASE	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G8A2A3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arginine N-methyltransferase n=2 Tax=Medicago truncatula RepID=G8A2A3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTQ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTQ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04720

Paralog	Evidence	Comments
Glyma06g04800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g044500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04720

Limit To All Plant Sequences

>Glyma04g04720.1   sequence type=CDS   gene model=Glyma04g04720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAAGCGGATGAGCAACTATGCGAGGCGGCCATTAAAGGTGACACGAAGAAAGTGAGGTCTCTTATATACTCCGGCGCTGACGTCACCCACTTTGACGGCGATGGCCTCAATCCTCTGATGCACGCCGCAAAGCACGGCCATGCACCCGTCCTCACCCTCCTCCTCTCCGTCGGCGCTCCCTGGAACGCTCTTTCTCCCTCCAACCTCTCCGCCGGTGACTACGCCATGCAAGAAGGCCACAACGAAACCTTCGAGCTTCTCCTCAACGCCGGGATCCAATCTGAACTGATACTGGGAACAATTGCGAGGAAGGCAAACAAGAACGGCGATTCCGGTCACGATTATTTGGAAGATAGGGTGAGTTTTAGCGAAGACAAGCTTATGGACTCTGAAAGCAAGGCTGTGATGATGGCATGGGAGAATCCGTTGATGGAGGCTCATGCTAAGGCGGTTTGTTCCGGTGGTGGCCACGTACTCAATATTGGGTTTGGTATGGGGCTCGTGGATTCGGCCATTCAGCGATATGCACCTGCTTCACACACCATTGTTGAGGCTCATCCTGAGGTTTATGAACGCATGCTTCGCTCCGGTTGGGGCCAGAAGGAAAATGTCAAGATTGTTTTTGGACGATGGCAAGATGTTCTGCCTCAGCTTGAAACATATGATGGAATATTCTTCGACACCTATGGGGAGTACTACGAAGATCTGAGGGAGTTCCATCAGCATCTCCCGGCATTGTTGAAGACTGGTGGTATCTACTCATTCTTCAATGGCCTTTGTGGCAGTAATGCATTTTTCCATGTTGTTTACTGCCATTTGGTATCTCTTGAGCTTGAGAATTTGGGGTATTCCACACAATTGATTCCATTGCCGGTTAAGGATTGTTTGGGAGAACAAGTTTGGGAAGGTGTGAAACAAAGATATTGGCAGCTCGATACGTACTATCTTCCTGTCTGTCAGGCCATAGAGAACCCTGAGTGA

Predicted protein sequences of Glyma04g04720

Limit To All Plant Sequences

>Glyma04g04720.1   sequence type=predicted peptide   gene model=Glyma04g04720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEADEQLCEAAIKGDTKKVRSLIYSGADVTHFDGDGLNPLMHAAKHGHAPVLTLLLSVGAPWNALSPSNLSAGDYAMQEGHNETFELLLNAGIQSELILGTIARKANKNGDSGHDYLEDRVSFSEDKLMDSESKAVMMAWENPLMEAHAKAVCSGGGHVLNIGFGMGLVDSAIQRYAPASHTIVEAHPEVYERMLRSGWGQKENVKIVFGRWQDVLPQLETYDGIFFDTYGEYYEDLREFHQHLPALLKTGGIYSFFNGLCGSNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEQVWEGVKQRYWQLDTYYLPVCQAIENPE*

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