SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48810 | AT | Annotation by Michelle Graham. TAIR10: cytochrome B5 isoform D | chr5:19789249-19790180 REVERSE LENGTH=140 | SoyBase | E_val: 4.00E-31 | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019745 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG0537 | KOG | Cytochrome b5 | JGI | ISS | |
| PTHR19359 | Panther | CYTOCHROME B5 | JGI | ISS | |
| PF00173 | PFAM | Cytochrome b5-like Heme/Steroid binding domain | JGI | ISS | |
| UniRef100_G7ZXK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome B5 n=1 Tax=Medicago truncatula RepID=G7ZXK9_MEDTR | SoyBase | E_val: 4.00E-81 | ISS |
| UniRef100_I1JTP7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTP7_SOYBN | SoyBase | E_val: 2.00E-87 | ISS |
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Glyma04g04695 not represented in the dataset |
Glyma04g04695 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g04775 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g04695.1 sequence type=CDS gene model=Glyma04g04695 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTATCACAACCTTCAACGGAACCGGCGTTGGATTTGGTTTCGGCATAGGTTGCGGTTTCGGTATAGGATGGGGTTTCGGAGGTATGCCATTGAACTTATTGGGTCTTGGTGCAGGTGGAGGCTGTGGCGTTGGAGTAGGACTTGGTTGGGGGTTTGGTGCTGCCTTTGGTAGCAAGTATCGGTCCTCACGGGTCACATTTCAAGGAGTGGATTTTGATAGGAAGGAGAAAGTTAACAGCACGGAGTTGTCAAAACCCAGCACCGAAGTTGCCCAACATAAATCCAACAAAGACTGTTGGCTGGTGATCAATGGCAGAGTGTTGGACGTGACAAAGTTCTTGGAGGAACACCCGGGAGGAGAAGAGGTGATTCTAGAGGTAGCTGGGAAGGATGCGACCAAAGAGTTTGACGTTATTGGACACAGCAAAGCAGCACAAAATATGGTCCTAAAGTACCAAGTGGGTGTCCTCCAAGGTGCCACAGTTCAAGAGGTAGACTTGAAGGATGTTGTGGACAAGGAATCCAACACCAAAGAGATGAGTGCCTTCGTGATCAAAGAGGGTGCAAGGTCTAAGTCCCTTGCTTTTTACGAGTTCTTTGTTCCACTTCTTGTAGCTGGTCTATATTTTGGTTACCGATGCCTCACTTATTAG
>Glyma04g04695.1 sequence type=predicted peptide gene model=Glyma04g04695 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVITTFNGTGVGFGFGIGCGFGIGWGFGGMPLNLLGLGAGGGCGVGVGLGWGFGAAFGSKYRSSRVTFQGVDFDRKEKVNSTELSKPSTEVAQHKSNKDCWLVINGRVLDVTKFLEEHPGGEEVILEVAGKDATKEFDVIGHSKAAQNMVLKYQVGVLQGATVQEVDLKDVVDKESNTKEMSAFVIKEGARSKSLAFYEFFVPLLVAGLYFGYRCLTY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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