Glyma04g04680 - SoyBase

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Report for Sequence Feature Glyma04g04680

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3480690
stop:	3483999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43120	AT	Annotation by Michelle Graham. TAIR10: ARM-repeat/Tetratricopeptide repeat (TPR)-like protein \| chr5:17312602-17314368 FORWARD LENGTH=588	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF132	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G8A2B6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G8A2B6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233950D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233950D related cluster n=1 Tax=unknown RepID=UPI000233950D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g04680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g044100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04680

Limit To All Plant Sequences

>Glyma04g04680.2   sequence type=CDS   gene model=Glyma04g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCCCAAATGAAGAAAAAAAGAGTGAATCCCATTCCCAACACTCCTTGCAACGTGGCGGAAGGTTCCTGCAGGGGTCACCTTTGCATCAAGCCTTGTTGTTTCTTCTGCAGCATGAGAGAACCAGACGCATCTCTCAGAAGGGCTGGAATAGCGACCTGCTTCAGAGAAATGCCTCAAGCTCAGGGAGAGAATCATCATGAACACGTGTTGGTGCTGAGTGGACTATGGCACATCGCAATGAGCCAACCCAACGACTCAGAGTTCCCATCCCTCGGCATATTCAAGTGCATGGCAAGTCTAATCCACAAAGGCATAAACGACAGAAACTGGCTTCTCACAAATCAAAACATATACATACCCTATTACGCTGCTCACATCATTGGCTCTTACACAATGAACAAGGAGGAGTTTGCACAAAAAGCCGTGCAATCAGGTGTGATACCCCCATTATTGGACTTGCTTAGTGGGAAAATCAGTTGGGTTGAGCAAAGAGTTGCTGTTAGAGCACTTGGTCACTTGGCCAGTTACAAAAGCACTTTCGAATCAGTAGCACAGCACGAACAAGAAGTGGTGAAACTGGCCTTGAAATTGGCTTCAACTTGTTTACAAGTGGTCTATGTTGACTTCGTAGCTTTGAAGGAAAACAAAAGGCTCGAGTACCACAGAAACTTGATGACCAGAGGGGTTGGGGATTTGGAGATGGAGAATCGCAAGGCAGAGGAATGGGCTAGCCAGCTTCAGTGTTGGTCTCTTTACCTTCTGAATTGCTTTGCTTGCAAAGATAGGTCTTTGGATCTCATTTGCAAAAAAGTGTTTCTCAAGGACTTATGTGATATGTGGGGTGGGTTGATAAGTCACACGTCACCAGCAGGGGTTGGACTGATAAGAATCTTGTGTTATAGCAAAGTAGGAAGGAAAAACATTGCTGAATTACCAAAAGTTGTGAACACTCTAGGCAACCTTTCAAGATCTTCAGATGATTGGCAGTATATAGGTATCGATTGTCTTCTTCTGCTTCTCAAGGACCCAGATACGAGGTACAAAGTTCTTGATGTTGCTGCTTCTTACCTTGTTGATTTGATTGAACTTAGAAGCCTTGGGGATAAATCCAACGTGGGTGAGACCATCTCAAAGGTTCTCCTGAATTTGAAACCTAACAGAGAAAAAGTTGGAGCAGCATTATTGCAAGAGGTGGTGGATAGGAGGAACAAGGATAAGCTGCTCTCGGAGGAAAAGTTAGAGGAAACAAGGGTTTTGGTGAGTTTGATAAAGCAACAAGCGAACCACATGTTCAGGTTGGGAGAGGTTGAAGAGGCATTGTTGAAATACTCTGAAGCGCTCGGTGTTTGTCCCTTGAGGTTTAGAAAAGAGAGAATGGTGATATATAGTAACAAAGCGCAGTGTCATATTCTTCTTAAGAACGCAGATTCTGCGATCAGTGACTCAACGCGTGCTCTTTGCCTGTCCAACCCAGCAAACACTCACAGGAAAAGCCTTTGGAGGAGGTCACAGGCATATGATATGAAAGGAATGGCGAAAGAGAGCCTCATGGACTGCATAATGTTCATTAACATGACCATGCGAGTGAAGATTCCTTACCACGCAGCGCGCATGATCTCCAAACACATGGAGGCCACGTGGCTCTTTGCCACTGCTCGCTCGAAGGTGGAAAAAACAACGCAAGAATTGAACCAAGTTGGCGGGGATAATGAGAACGGTGGCAACCATGAAGAGCAACCGCGTGATCATGAGGCGAAGATGATGATGATGGAAAACAGATACAACAATCTCTTACACGGTCTGTCAACCATTATTGAAGAACCTTTTCACGCAAAAGAAGCTGGTAGGAGAAAGATGGAAAGGGCGAGAAGGAGATTCAACAAAGGTGTTGTGGCTGGACCAACGTAA

Predicted protein sequences of Glyma04g04680

Limit To All Plant Sequences

>Glyma04g04680.2   sequence type=predicted peptide   gene model=Glyma04g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSQMKKKRVNPIPNTPCNVAEGSCRGHLCIKPCCFFCSMREPDASLRRAGIATCFREMPQAQGENHHEHVLVLSGLWHIAMSQPNDSEFPSLGIFKCMASLIHKGINDRNWLLTNQNIYIPYYAAHIIGSYTMNKEEFAQKAVQSGVIPPLLDLLSGKISWVEQRVAVRALGHLASYKSTFESVAQHEQEVVKLALKLASTCLQVVYVDFVALKENKRLEYHRNLMTRGVGDLEMENRKAEEWASQLQCWSLYLLNCFACKDRSLDLICKKVFLKDLCDMWGGLISHTSPAGVGLIRILCYSKVGRKNIAELPKVVNTLGNLSRSSDDWQYIGIDCLLLLLKDPDTRYKVLDVAASYLVDLIELRSLGDKSNVGETISKVLLNLKPNREKVGAALLQEVVDRRNKDKLLSEEKLEETRVLVSLIKQQANHMFRLGEVEEALLKYSEALGVCPLRFRKERMVIYSNKAQCHILLKNADSAISDSTRALCLSNPANTHRKSLWRRSQAYDMKGMAKESLMDCIMFINMTMRVKIPYHAARMISKHMEATWLFATARSKVEKTTQELNQVGGDNENGGNHEEQPRDHEAKMMMMENRYNNLLHGLSTIIEEPFHAKEAGRRKMERARRRFNKGVVAGPT*

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