Glyma04g04660 - SoyBase

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Report for Sequence Feature Glyma04g04660

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3464360
stop:	3468477
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47240	AT	Annotation by Michelle Graham. TAIR10: NRAMP metal ion transporter 2 \| chr1:17309043-17311308 REVERSE LENGTH=530	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006875	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015103	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic anion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1291	KOG	Mn2+ and Fe2+ transporters of the NRAMP family	JGI		ISS
PTHR11706	Panther	MANGANESE TRANSPORTER	JGI		ISS
PTHR11706:SF8	Panther	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN (NRAMP) (MANGANESE TRANSPORTER)	JGI		ISS
PF01566	PFAM	Natural resistance-associated macrophage protein	JGI		ISS
UniRef100_G8A2C0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Natural resistance-associated macrophage protein n=2 Tax=Medicago truncatula RepID=G8A2C0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTP4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04660

Paralog	Evidence	Comments
Glyma06g04720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g044000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04660

Limit To All Plant Sequences

>Glyma04g04660.1   sequence type=CDS   gene model=Glyma04g04660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCTCCGTCGCGAGAAGAGGAATCGGAGGCGAACCGGCTTCTAGAAGAAGCAGCATCATCATGGGAGGAAGAGGTGGCATACGAAGCGGGGGAGAAGATCCTGGTGGCGGATTTGGAGTTTGACAGGGTGGACGATGGGAGCGCTCCTCCTCCTTTCTCGTGGAAGAAGCTGTGGCTGTTCACTGGGCCTGGGTTCTTGATGAGCATAGCGTTTTTGGATCCGGGGAATCTGGAGGGGGATCTCCAGGCTGGGGCCATCGCGGGCTACTCCCTCCTCTGGCTCCTCATGTGGGCCACCTTCATGGGCCTCTTGATCCAGCTTCTCTCCGCCAGGGTCGGTGTGGCCACGGGCCGCCACCTCGCCGAGCTCTGCAGGGACGAGTATCCCAATTGGGCCCGCCTCGTGCTCTGGTTCATGGCCGAGCTGGCCCTGATTGGCGCTGACATTCAAGAGGTTATTGGAAGTGCCATCGCCATCCAAATTCTTAGCCGAGGCTTCTTCCCTCTCTGGGCTGGAGTTCTAATCACTGCTTCCGATTGCTTTTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCGGTTCTCATCGCTGTCATGGGTCTTTCTTTTGCCTGGATGTTTGGTGATGCTCAACCTAATAGAGAAGAGCTTTTAATGGGTATTTTGGTTCCAAGACTTGGCTCAAAAACAATTCGTCAGGCTGTGGGTGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTTCAGTCAAGGAAGGTTGATCCTAAAAAGATAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATTGAGTCATCGGCTGCACTTGCAGTCTCCTTCATGATCAATCTTTTTGTCACCACAGTTTTTGCCAAGGGTTTTTATGGAACCAAGCAGGCAGATAGCATAGGATTGGTCAATGCAGGGCAGTATCTTGAAGAGAAGTATGGGGGAGGAGTCTTCCCTATTCTTTATATATGGGGGATTGGGTTATTGGCAGCTGGGCAGAGTAGCACCATCACTGGCACATATGCTGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGTTGAGGGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGATCCGAAGGCTCATTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCAATGCAAATTCCCTTTGCTCTAATTCCCCTCCTCACATTGGTCTCCAAAGAGCAGATCATGGGAACCTTTAGGGTTGGGCCTGTTCTTGAGAGAGTAGCATGGACTGTTGCTGGACTGATAATAATAATTAATGGATATCTCTTGTTAGATTTCTTCGTTTCTGAGGTGAATGGCATCTTGCTTGGTCTTTTAGCCTGCTCCTGCACAACAGCCTATATTGCGTTCATTGTATATTTGGTTTCACAGAGCGGTATTCTTCCTTCTGCTTGGGTTAATCGTCTTCCCAAAGGATTTTCTTCTTGTGGGAATTAA

Predicted protein sequences of Glyma04g04660

Limit To All Plant Sequences

>Glyma04g04660.1   sequence type=predicted peptide   gene model=Glyma04g04660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAPSREEESEANRLLEEAASSWEEEVAYEAGEKILVADLEFDRVDDGSAPPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSRGFFPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIAVMGLSFAWMFGDAQPNREELLMGILVPRLGSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPKKIGRVQEALNYYSIESSAALAVSFMINLFVTTVFAKGFYGTKQADSIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEGSLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQIMGTFRVGPVLERVAWTVAGLIIIINGYLLLDFFVSEVNGILLGLLACSCTTAYIAFIVYLVSQSGILPSAWVNRLPKGFSSCGN*

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