Glyma04g04651 - SoyBase

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Report for Sequence Feature Glyma04g04651

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3456315
stop:	3459385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04651

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38185	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr2:16000155-16002699 FORWARD LENGTH=441	SoyBase	E_val: 5.00E-38	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR12183	Panther	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	JGI		ISS
UniRef100_Q2HRJ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger, RING-type n=1 Tax=Medicago truncatula RepID=Q2HRJ4_MEDTR	SoyBase	E_val: 1.00E-131	ISS
UniRef100_UPI0002339D30	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D30 related cluster n=1 Tax=unknown RepID=UPI0002339D30	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04651

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04651 not represented in the dataset	Glyma04g04651 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04651

Paralog	Evidence	Comments
Glyma06g04705	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04651 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g043900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04651

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04651

Limit To All Plant Sequences

>Glyma04g04651.1   sequence type=CDS   gene model=Glyma04g04651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGTTACACCGAGCCATGCGCACTATACCATCCCATCATCAGCGGTGGCAACATGCTTGGATGCTGCCTCCTCTCACCATTTGGATTTGTGTTTCAATCACACTTCGTTATGGTTATTACGGCGATTCATGCATCCTGCTTGGCCCTGCCTCGTCCCGTTTGATGAAGACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAACGAGGACAATAATCAAGTTATTCTCCATGCCTTCAACGAGGAGCCCGAGTTAAGCTCCCAAACTAATTGGACAGTGTCAAATTTCTTCCTTGTTGAAGCGTATAAAAGCAAGGTAATTTCTTTGTGGTTAAATCAGGGCTCCACCATCCGTATGAGGTGGGAAGCACACACTACTAGTAGTTTGGATCAGCTACATGGGATGGTGATCAAAGGAGAAAAGAAGTTTGAACTACTACAGCCTAAACAAACGAGCTTCCTCAATGCAATTGCTCTTCGCAAGACTGTTAATGGTAAAGAAGCTGAATACAATGTTGAGGAAGATAATATATACCACATTGGGGTTCTAAACATGAATTCCAGGAACATAATATTGACTATGAAAGTTAATGTTTTGGCAAAGGTATATGATACCACCAAAGGCAAGAAGATGTGCTCTACTGCAAATGGATTCTGTAGACTCAGTTTTGTCTTCCCTAATACTCAGTATGTTATTCTTACGGCAACTGGCAAAGTTGATGGGGGATCGTATGTTGAAATTTCTTTTCTGGCTCGTGTGTTGACCTACATATTACTTTTAGGAGCTCTTATGATTGTTATTTATCTGGTTCTGAAGTTCCTTGAAGTCCATGAAGGTGGTGATCAGAATAGTCATGCGGCAGTCGACGTCACATACAGAACAAGTAATGTAGTTGCAAGGCAAACCGAAACTCAGCCCTTGATGCAAGTGGAGACAAATCGATTGACATATGGAACAAATGCAAAAGATGATGAAGAAGAAGATTCAGGAGCATCCAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTGTGTTGCATTTGTTATGATGAACAACGCAGTAGCTTCTTTGTTCCTTGTGGACATTGTGCCACTTGCTATGACTGTGCACAGAGGATTTTAGATGAGGAGAGCATAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTATATCATAATTAG

Predicted protein sequences of Glyma04g04651

Limit To All Plant Sequences

>Glyma04g04651.1   sequence type=predicted peptide   gene model=Glyma04g04651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLHRAMRTIPSHHQRWQHAWMLPPLTIWICVSITLRYGYYGDSCILLGPASSRLMKTSSVFVKQLQVSNEDNNQVILHAFNEEPELSSQTNWTVSNFFLVEAYKSKVISLWLNQGSTIRMRWEAHTTSSLDQLHGMVIKGEKKFELLQPKQTSFLNAIALRKTVNGKEAEYNVEEDNIYHIGVLNMNSRNIILTMKVNVLAKVYDTTKGKKMCSTANGFCRLSFVFPNTQYVILTATGKVDGGSYVEISFLARVLTYILLLGALMIVIYLVLKFLEVHEGGDQNSHAAVDVTYRTSNVVARQTETQPLMQVETNRLTYGTNAKDDEEEDSGASSSSSEELYDEKLCCICYDEQRSSFFVPCGHCATCYDCAQRILDEESIVCPICRRLIHKVRRLYHN*

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