SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g04641

Feature Type:gene_model
Chromosome:Gm04
Start:3448649
stop:3453953
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04641
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77980AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 66 | chr1:29315212-29317067 REVERSE LENGTH=332 SoyBaseE_val: 1.00E-46ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009827GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0010584GO-bp Annotation by Michelle Graham. GO Biological Process: pollen exine formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF19Panther MADS BOX PROTEIN JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
UniRef100_G7ZXM5UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box transcription factor n=1 Tax=Medicago truncatula RepID=G7ZXM5_MEDTR SoyBaseE_val: 1.00E-137ISS
UniRef100_UPI000233950BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233950B related cluster n=1 Tax=unknown RepID=UPI000233950B SoyBaseE_val: 6.00E-169ISS

Expression Patterns of Glyma04g04641
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04641 not represented in the dataset
Glyma04g04641 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g04641 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g043800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04641
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g04641
>Glyma04g04641.2   sequence type=transcript   gene model=Glyma04g04641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACTCTTGTTGCCGTGAAACTCTAAAGGATGCATAATAAAGAGCACATTCAAAAGTTGCTTAGTAAGTTGAAAGATGAAGCTGGTCAAATATGTCAAGCCCCTAGCTCAATGACTTCAGATTCCCAAATTGAGGATCTTCGAAGAGAAATTTTCACTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGACTAAGGATATTTGAAGGTGATCCTTCAGAGATCACAACGCTCAGCGAGGCTGAATATCGTGAATATGTCCTTCGGGATACTCTAAAACAAGTGCAACTGCGAAAGTGTGTTTTGGAGGAGTACAATTCTCATGCCACTCATTCTCCACAGGTACATGCTGCAAAAACTGTAGATGTAAATGGATTTATTTCCAGAGCCTCAAAGAACCCAGTAGATTGGTTTCCACAGGGAGATCCACTACATGTCCAGACTCTGAACTTTGCGAATGTTTATGACACTGCTCTTGTCAGAGATCAACAATCACATCATTGCACGGTTGTTGATATGTTAACACCAACTTCGACCCTTCTGCATTCCGCAAACATGGATCTGAATGGCCAAATGAATCCGAGGAGTAGTTTAGACGCTGGCATTAGTAATACATTACATCCCCAGTTTGGACAAGCTATTCACACCAATTCGTCCTCTTGGCAGCATCTTAATCCTTTAGGGAGTAGAACTTTATCGATTGCAGAGACAAGGGAAGTGCAACTCTTGAACAGTGTTTTTCTCAATTTACCCGGTCAAACATCTTAATACCTGAACAATCAAGATCAACATCGATCATGATATATGGTCTCTGGAAAACTAGAAAGTTGTTGAACAGAGAAAGAAGGCAAAACTTGAACATGTATTTTCATTTCCTTAATTAACACCAGATGAAATAGAATGTTTTCAATGCGTCATTGTTTTTTTTGTTTGGCTTCAATGTCTATGACTTGTAGATATTATGCATTAAAATTTTAAGATGTGGGATCCGCACGGCTTTGGAAGTTGCGCACACCTACATGCTACAGAAACTTCCTGCTTCGGTTTCTGGTTTGGTTCTATTCTACGTGATACCATGGGATTGGGATTCCATGTACTGCAGAATCTTCCTTCTTCGGCTTCTGGTTTGGCTCTACCTGATACCATGGGATTGCATGAATTACATCACTCAAAGAATAACTAATTAATTGGAAACTTTCTTCCGTGCTCAATGTAAGGG
Coding sequences of Glyma04g04641
>Glyma04g04641.1   sequence type=CDS   gene model=Glyma04g04641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGTGAAGCTTCCGATCAAAAAGATTGAGAACACAACCAATAGGCAAGTCACTTTCTCCAAGAGGAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCAGGAAGAGCCACTTTCTTCTCTGGCAACAAAAGCATTGAAGAAATTCTAGAACGATATGTTAATCTTTCGGAGGGTGAACACGGAAGGATGCATAATAAAGAGCACATTCAAAAGTTGCTTAGTAAGTTGAAAGATGAAGCTGGTCAAATATGTCAAGCCCCTAGCTCAATGACTTCAGATTCCCAAATTGAGGATCTTCGAAGAGAAATTTTCACTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGACTAAGGATATTTGAAGGTGATCCTTCAGAGATCACAACGCTCAGCGAGGCTGAATATCGTGAATATGTCCTTCGGGATACTCTAAAACAAGTGCAACTGCGAAAGTGTGTTTTGGAGGAGTACAATTCTCATGCCACTCATTCTCCACAGGTACATGCTGCAAAAACTGTAGATGTAAATGGATTTATTTCCAGAGCCTCAAAGAACCCAGTAGATTGGTTTCCACAGGGAGATCCACTACATGTCCAGACTCTGAACTTTGCGAATGTTTATGACACTGCTCTTGTCAGAGATCAACAATCACATCATTGCACGGTTGTTGATATGTTAACACCAACTTCGACCCTTCTGCATTCCGCAAACATGGATCTGAATGGCCAAATGAATCCGAGGAGTAGTTTAGACGCTGGCATTAGTAATACATTACATCCCCAGTTTGGACAAGCTATTCACACCAATTCGTCCTCTTGGCAGCATCTTAATCCTTTAGGGAGTAGAACTTTATCGATTGCAGAGACAAGGGAAGTGCAACTCTTGAACAGTGTTTTTCTCAATTTACCCGGTCAAACATCTTAA

>Glyma04g04641.2   sequence type=CDS   gene model=Glyma04g04641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAATAAAGAGCACATTCAAAAGTTGCTTAGTAAGTTGAAAGATGAAGCTGGTCAAATATGTCAAGCCCCTAGCTCAATGACTTCAGATTCCCAAATTGAGGATCTTCGAAGAGAAATTTTCACTTGCAAGTCTCAATTGGAAGAGATGGAGAAGCGACTAAGGATATTTGAAGGTGATCCTTCAGAGATCACAACGCTCAGCGAGGCTGAATATCGTGAATATGTCCTTCGGGATACTCTAAAACAAGTGCAACTGCGAAAGTGTGTTTTGGAGGAGTACAATTCTCATGCCACTCATTCTCCACAGGTACATGCTGCAAAAACTGTAGATGTAAATGGATTTATTTCCAGAGCCTCAAAGAACCCAGTAGATTGGTTTCCACAGGGAGATCCACTACATGTCCAGACTCTGAACTTTGCGAATGTTTATGACACTGCTCTTGTCAGAGATCAACAATCACATCATTGCACGGTTGTTGATATGTTAACACCAACTTCGACCCTTCTGCATTCCGCAAACATGGATCTGAATGGCCAAATGAATCCGAGGAGTAGTTTAGACGCTGGCATTAGTAATACATTACATCCCCAGTTTGGACAAGCTATTCACACCAATTCGTCCTCTTGGCAGCATCTTAATCCTTTAGGGAGTAGAACTTTATCGATTGCAGAGACAAGGGAAGTGCAACTCTTGAACAGTGTTTTTCTCAATTTACCCGGTCAAACATCTTAA
Predicted protein sequences of Glyma04g04641
>Glyma04g04641.1   sequence type=predicted peptide   gene model=Glyma04g04641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRVKLPIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATFFSGNKSIEEILERYVNLSEGEHGRMHNKEHIQKLLSKLKDEAGQICQAPSSMTSDSQIEDLRREIFTCKSQLEEMEKRLRIFEGDPSEITTLSEAEYREYVLRDTLKQVQLRKCVLEEYNSHATHSPQVHAAKTVDVNGFISRASKNPVDWFPQGDPLHVQTLNFANVYDTALVRDQQSHHCTVVDMLTPTSTLLHSANMDLNGQMNPRSSLDAGISNTLHPQFGQAIHTNSSSWQHLNPLGSRTLSIAETREVQLLNSVFLNLPGQTS*

>Glyma04g04641.2   sequence type=predicted peptide   gene model=Glyma04g04641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHNKEHIQKLLSKLKDEAGQICQAPSSMTSDSQIEDLRREIFTCKSQLEEMEKRLRIFEGDPSEITTLSEAEYREYVLRDTLKQVQLRKCVLEEYNSHATHSPQVHAAKTVDVNGFISRASKNPVDWFPQGDPLHVQTLNFANVYDTALVRDQQSHHCTVVDMLTPTSTLLHSANMDLNGQMNPRSSLDAGISNTLHPQFGQAIHTNSSSWQHLNPLGSRTLSIAETREVQLLNSVFLNLPGQTS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo