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Report for Sequence Feature Glyma04g04620

Feature Type:gene_model
Chromosome:Gm04
Start:3440803
stop:3443576
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43080AT Annotation by Michelle Graham. TAIR10: Cyclin A3;1 | chr5:17293227-17294789 FORWARD LENGTH=355 SoyBaseE_val: 3.00E-132ISS
GO:0000079GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity SoyBaseN/AISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016538GO-mf Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity SoyBaseN/AISS
GO:0019901GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase binding SoyBaseN/AISS
KOG0654 KOG G2/Mitotic-specific cyclin A JGI ISS
PTHR10177Panther CYCLINS JGI ISS
PTHR10177:SF49Panther G2/MITOTIC-SPECIFIC CYCLIN JGI ISS
PF00134PFAM Cyclin, N-terminal domain JGI ISS
PF02984PFAM Cyclin, C-terminal domain JGI ISS
UniRef100_I1JTP0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTP0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q39877UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitotic cyclin a1-type n=1 Tax=Glycine max RepID=Q39877_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma06g04680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g043600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g04620.1   sequence type=CDS   gene model=Glyma04g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACACATTCTCTGATTCACCCAACACTTCAACTCCATCTTCTCCTATCTCTCTGTTCCAAATTCACACACACAAGGAAAAAGATGGAGACTCGTGCCGCCTCAAAGAGAAAGGCAAACGCCGCCACCATAGTCATAGTCGAAAAACAACACCCCAAGAGGCAGCGTGTCGTGTTGGGTGAACTTTCCAATTTACCAAACATTATTGTCCCCGAAACTCAAAATCCACGCAAAGAGAAACTACAATGTCGGAAGAATCCCAATATGAAGAAACCATCTCTCACAAACAACACCCTTTCTTTCCCCCAGATCGATGAATCTTATGATTTCGAGATCTTTGAGTATCTTCACGCAATGGAGAGAAAGAGAAGACCAATGATTGATTACGTGGAGAAAGTTCAGAAACAAGTTACGACAACTATGAGGGCAATATTGGTGGATTGGTTGGTAGAGGTAGCTGAGGAGTACAAGCTTCTCCCAGATACCCTTCATCTATCTGTTTCGTACATCGATAGATTTTTGTCTGTTAGTCCTGTTAGTAAATCAAGGCTTCAATTGCTGGGTGTTTCATCCATGCTCATTGCTGCCAAGTATGAGGAAGTTGACCCACCCCGTGTTGATGCGTTCTGCAATATCACTGATAACACATACCACAAGGCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGACTCTAAAGTTTGAGATGGGGAATCCAACTGTAAACACCTTTCTAAGGAGGTTTGCTGATGTTGCTTCTGAGAACCAGAAAACTCCAAATTTGCAGATTGAATTTTTGATTGGCTACCTTGCTGAGCTAAGTTTGTTGGACTATGATTGTTTGATATTCTTGCCTTCTATTTTGGCGGCATCAGCTATATTTCTTGCTAGATTTATTATCTGGCCTGAAGTGCATCCTTGGACTTCTTCCTTGTCTGAATGCTTGGGTTACACACCGGCTGATTTAAAAGAATGTGTCCTCATCTTGCATGACTTGTATTTGTCAAGAAAGGCAGTGTCCTTCAAAGCTGTTCGGGAGAAATACAAGCAACACAAGTTCAAATATGTAGCTAATCTGCCTTCCCCTCCACATGTACCAAGTTATTACTTTGAAGAACAGTGA

>Glyma04g04620.1   sequence type=predicted peptide   gene model=Glyma04g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METHSLIHPTLQLHLLLSLCSKFTHTRKKMETRAASKRKANAATIVIVEKQHPKRQRVVLGELSNLPNIIVPETQNPRKEKLQCRKNPNMKKPSLTNNTLSFPQIDESYDFEIFEYLHAMERKRRPMIDYVEKVQKQVTTTMRAILVDWLVEVAEEYKLLPDTLHLSVSYIDRFLSVSPVSKSRLQLLGVSSMLIAAKYEEVDPPRVDAFCNITDNTYHKAEVVKMEADILKTLKFEMGNPTVNTFLRRFADVASENQKTPNLQIEFLIGYLAELSLLDYDCLIFLPSILAASAIFLARFIIWPEVHPWTSSLSECLGYTPADLKECVLILHDLYLSRKAVSFKAVREKYKQHKFKYVANLPSPPHVPSYYFEEQ*







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