Glyma04g04530 - SoyBase

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Report for Sequence Feature Glyma04g04530

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3388137
stop:	3392506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02740	AT	Annotation by Michelle Graham. TAIR10: MRG family protein \| chr1:599734-602021 REVERSE LENGTH=327	SoyBase	E_val: 8.00E-97	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR10880	Panther	MALE-SPECIFIC LETHAL-3 - RELATED	JGI		ISS
PTHR10880:SF15	Panther	MORTALITY FACTOR 4-LIKE PROTEIN 1	JGI		ISS
PF05712	PFAM	MRG	JGI		ISS
PF11717	PFAM	RNA binding activity-knot of a chromodomain	JGI		ISS
UniRef100_D7KBB7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromatin binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KBB7_ARALL	SoyBase	E_val: 8.00E-95	ISS
UniRef100_I1JTN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTN1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04530

Paralog	Evidence	Comments
Glyma06g04620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g042700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04530

Limit To All Plant Sequences

>Glyma04g04530.2   sequence type=transcript   gene model=Glyma04g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGAGAAGAAAATAAGAGGGTGAGAAAACATACATACATACATCTTGGTTGGTTTTGGGTTTAAGGAGGGGAAATTGATTCTTGTTCTTTGGGAAGGATAAGGAATCAATCTGATCGCTGGAAGAGAGGAAGTAGTAATGGAAATGGGGATTTCCAAGACAACAACAAGCACTGAGGTTACCGACGACAATTCCAATAGCAGCAGCACCACTCATACTCAAACTCGCAACCATATCTCCTTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAACCAATCATTCTGATTGTCTTTACGAAGCCAAGGTGAGGCAAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTGGTTGGAAGAAGAGATGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACCGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGGAAAACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGTGTGTTTGCCTTGTTAAGCCTGCATATGTTTATGTATGGACGCAACCTGTTCATGTGGAAGAACTCAAGAATCAATTACATATGCTTCTAAGGGCTGCAAACTTTTTTCCTAGCCAAATTGATGTCATTCCTGGAGTTCTGCTTCTGGTTAGTCTAGTGACTATCACTTTTCCTGGTTATTTATAAGATAAACTAGCTTAGTTTGCTTTAAACTTGGGAAAGTAATTTGTAAACACGATACTGATTATGAAATTCCATTTTCAGTTTTTCATAATGCCTGCTCATTTGCCCATTTCTTTTGCTTTTGCAGTAAAAGTATTTGTTCA

Coding sequences of Glyma04g04530

Limit To All Plant Sequences

>Glyma04g04530.1   sequence type=CDS   gene model=Glyma04g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGGGGATTTCCAAGACAACAACAAGCACTGAGGTTACCGACGACAATTCCAATAGCAGCAGCACCACTCATACTCAAACTCGCAACCATATCTCCTTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAACCAATCATTCTGATTGTCTTTACGAAGCCAAGCGATTCCGTTACCTGCTGCTGCTGCTGCCTTCTCATTTTCTCAATTCATTTTTTTTTCAGGGTTGGAAGAAGAGATGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACCGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGGAAAACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGTGTGTTTGCCTTGTTAA

>Glyma04g04530.2   sequence type=CDS   gene model=Glyma04g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGGGGATTTCCAAGACAACAACAAGCACTGAGGTTACCGACGACAATTCCAATAGCAGCAGCACCACTCATACTCAAACTCGCAACCATATCTCCTTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAACCAATCATTCTGATTGTCTTTACGAAGCCAAGGTGAGGCAAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTGGTTGGAAGAAGAGATGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACCGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGGAAAACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGTGTGTTTGCCTTGTTAA

Predicted protein sequences of Glyma04g04530

Limit To All Plant Sequences

>Glyma04g04530.1   sequence type=predicted peptide   gene model=Glyma04g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMGISKTTTSTEVTDDNSNSSSTTHTQTRNHISFAAPYAVGEKVLTNHSDCLYEAKRFRYLLLLLPSHFLNSFFFQGWKKRWDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKVPRGSLAKSKPTNVSRGRKRRNESVIKGKPAVDPDKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGSVGDSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHASVEEETLMELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQVCLPC*

>Glyma04g04530.2   sequence type=predicted peptide   gene model=Glyma04g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMGISKTTTSTEVTDDNSNSSSTTHTQTRNHISFAAPYAVGEKVLTNHSDCLYEAKVRQVEYRNTKGWQFLVHYLGWKKRWDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKVPRGSLAKSKPTNVSRGRKRRNESVIKGKPAVDPDKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGSVGDSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHASVEEETLMELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQVCLPC*

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