SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02740 | AT | Annotation by Michelle Graham. TAIR10: MRG family protein | chr1:599734-602021 REVERSE LENGTH=327 | SoyBase | E_val: 8.00E-97 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PTHR10880 | Panther | MALE-SPECIFIC LETHAL-3 - RELATED | JGI | ISS | |
| PTHR10880:SF15 | Panther | MORTALITY FACTOR 4-LIKE PROTEIN 1 | JGI | ISS | |
| PF05712 | PFAM | MRG | JGI | ISS | |
| PF11717 | PFAM | RNA binding activity-knot of a chromodomain | JGI | ISS | |
| UniRef100_D7KBB7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chromatin binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KBB7_ARALL | SoyBase | E_val: 8.00E-95 | ISS |
| UniRef100_I1JTN1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTN1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g04530 not represented in the dataset |
Glyma04g04530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g04620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g042700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g04530.2 sequence type=transcript gene model=Glyma04g04530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGAGAAGAAAATAAGAGGGTGAGAAAACATACATACATACATCTTGGTTGGTTTTGGGTTTAAGGAGGGGAAATTGATTCTTGTTCTTTGGGAAGGATAAGGAATCAATCTGATCGCTGGAAGAGAGGAAGTAGTAATGGAAATGGGGATTTCCAAGACAACAACAAGCACTGAGGTTACCGACGACAATTCCAATAGCAGCAGCACCACTCATACTCAAACTCGCAACCATATCTCCTTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAACCAATCATTCTGATTGTCTTTACGAAGCCAAGGTGAGGCAAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTGGTTGGAAGAAGAGATGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACCGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGGAAAACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGTGTGTTTGCCTTGTTAAGCCTGCATATGTTTATGTATGGACGCAACCTGTTCATGTGGAAGAACTCAAGAATCAATTACATATGCTTCTAAGGGCTGCAAACTTTTTTCCTAGCCAAATTGATGTCATTCCTGGAGTTCTGCTTCTGGTTAGTCTAGTGACTATCACTTTTCCTGGTTATTTATAAGATAAACTAGCTTAGTTTGCTTTAAACTTGGGAAAGTAATTTGTAAACACGATACTGATTATGAAATTCCATTTTCAGTTTTTCATAATGCCTGCTCATTTGCCCATTTCTTTTGCTTTTGCAGTAAAAGTATTTGTTCA
>Glyma04g04530.1 sequence type=CDS gene model=Glyma04g04530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGGGATTTCCAAGACAACAACAAGCACTGAGGTTACCGACGACAATTCCAATAGCAGCAGCACCACTCATACTCAAACTCGCAACCATATCTCCTTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAACCAATCATTCTGATTGTCTTTACGAAGCCAAGCGATTCCGTTACCTGCTGCTGCTGCTGCCTTCTCATTTTCTCAATTCATTTTTTTTTCAGGGTTGGAAGAAGAGATGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACCGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGGAAAACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGTGTGTTTGCCTTGTTAA >Glyma04g04530.2 sequence type=CDS gene model=Glyma04g04530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGGGATTTCCAAGACAACAACAAGCACTGAGGTTACCGACGACAATTCCAATAGCAGCAGCACCACTCATACTCAAACTCGCAACCATATCTCCTTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAACCAATCATTCTGATTGTCTTTACGAAGCCAAGGTGAGGCAAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTGGTTGGAAGAAGAGATGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACCGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAGTCCCGCGTGGTTCTCTGGCGAAGTCCAAGCCTACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGGAAAACCTGCAGTTGATCCTGACAAGCTTGTTAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCTCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGATGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGTGTGTTTGCCTTGTTAA
>Glyma04g04530.1 sequence type=predicted peptide gene model=Glyma04g04530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMGISKTTTSTEVTDDNSNSSSTTHTQTRNHISFAAPYAVGEKVLTNHSDCLYEAKRFRYLLLLLPSHFLNSFFFQGWKKRWDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKVPRGSLAKSKPTNVSRGRKRRNESVIKGKPAVDPDKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGSVGDSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHASVEEETLMELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQVCLPC* >Glyma04g04530.2 sequence type=predicted peptide gene model=Glyma04g04530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMGISKTTTSTEVTDDNSNSSSTTHTQTRNHISFAAPYAVGEKVLTNHSDCLYEAKVRQVEYRNTKGWQFLVHYLGWKKRWDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKVPRGSLAKSKPTNVSRGRKRRNESVIKGKPAVDPDKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGSVGDSVEEIMKGLSCYFDKALPVMLLYKNERQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHASVEEETLMELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQVCLPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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