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Report for Sequence Feature Glyma04g04521

Feature Type:gene_model
Chromosome:Gm04
Start:3376871
stop:3380526
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04521
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19130AT Annotation by Michelle Graham. TAIR10: S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828 SoyBaseE_val: 6.00E-19ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0048544GO-bp Annotation by Michelle Graham. GO Biological Process: recognition of pollen SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF599Panther JGI ISS
PF01453PFAM D-mannose binding lectin JGI ISS
UniRef100_G7J0Q3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Brassinosteroid LRR receptor kinase n=1 Tax=Medicago truncatula RepID=G7J0Q3_MEDTR SoyBaseE_val: 1.00E-83ISS
UniRef100_UPI0002339BD2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339BD2 related cluster n=1 Tax=unknown RepID=UPI0002339BD2 SoyBaseE_val: 5.00E-117ISS

Expression Patterns of Glyma04g04521
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04521 not represented in the dataset
Glyma04g04521 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g04521 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g042600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04521
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g04521
>Glyma04g04521.1   sequence type=CDS   gene model=Glyma04g04521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATAATGTGGTTGATCCTTGTTTCTCTTGTTATATCTCTGCAACTTTCATCTTCAGAATGGAGGACCCGAAAGATGTCATGCTCTCATAAAAAAAATGGCATGTTCTCTGCTGGCTTCTATGCCGTTGGCCAAAACGCATATTCCTTTGCCGTTTGGTTCTCCGAACCCTACGGCCAAACTCGAAACGCAACCGTTGTATGGATGGCGAACCGTGACCAGCCCGTGAACGGCAAGGACTCAAAGATTTCGCTACTTCGCAACGGCAATCTCGCCTTAAACGACGTTGACGAGTCCCTCGTTTGGTACACAAACACCGCTTCACTGTCCTCCTCTGTGCGTCTATTTTTCGACAACACCGGCAACCTCCTTTTGCATGAAACGCAGGCTACTGGTGTCGTTTTGTGGCAAAGCTTTGATTTCCCTACAGATACCCTTTTACCTCAACAAGTGTTCACGAGACACTCGAAACTTGTCTCTTCTAGAAGTGAGACCAACATGTCCTCTGGTTTCTACGCCTTGTTCTTCGACAACGACAACATTTTTCGTCTTCTTTACGATGGCCCTGAAGTTTCTGGCCTTTACTGGCCAGATCCTTGCAGAGTTGCGGTCATGGACACGCTCGACAATTTTAGTTCCTCAGATGATTTACACTTTTTGACATCTGATTACGGCACTCTGATCCAAAGAAGATTGGTCCTTGATCACGATGGAAACATTCGCGTTTATAGTCAGAGACACGGGGGAGTGGGGGGACTCGAAGTTTTTTGCATATTTGTGATTTGGTTTTTTCTGGTGAGAACAAGGGGGCAAAAATATTCGGGTGTAGATGGACGAGTCTATAATCTGGCCATGAGTGGTTTTAGAAAATTCAGTTATTCTCAGCTGAAACAAGCCACCAAAGGGTTTAGTCAAGAGATAGGAAGGGATGCAGGAGGGGTTGTATACAAAGGAGTGTGTTAG
Predicted protein sequences of Glyma04g04521
>Glyma04g04521.1   sequence type=predicted peptide   gene model=Glyma04g04521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIMWLILVSLVISLQLSSSEWRTRKMSCSHKKNGMFSAGFYAVGQNAYSFAVWFSEPYGQTRNATVVWMANRDQPVNGKDSKISLLRNGNLALNDVDESLVWYTNTASLSSSVRLFFDNTGNLLLHETQATGVVLWQSFDFPTDTLLPQQVFTRHSKLVSSRSETNMSSGFYALFFDNDNIFRLLYDGPEVSGLYWPDPCRVAVMDTLDNFSSSDDLHFLTSDYGTLIQRRLVLDHDGNIRVYSQRHGGVGGLEVFCIFVIWFFLVRTRGQKYSGVDGRVYNLAMSGFRKFSYSQLKQATKGFSQEIGRDAGGVVYKGVC*






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