Report for Sequence Feature Glyma04g04480
Feature Type: gene_model
Chromosome: Gm04
Start: 3339863
stop: 3342749
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g04480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G53010 AT
Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297
SoyBase E_val: 3.00E-101 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF03629 PFAM
Domain of unknown function (DUF303)
JGI ISS
UniRef100_D7MF41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MF41_ARALL
SoyBase E_val: 5.00E-80 ISS
UniRef100_I1JTM7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTM7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g04480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g04480
Paralog Evidence Comments
Glyma06g04600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g04480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g042200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g04480
Coding sequences of Glyma04g04480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g04480.1 sequence type=CDS gene model=Glyma04g04480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTTGCTTGTTATTGTTGGTATTTCTGATTCAATCATGGGCAGTGAAGGCACAACAAGTCTACGATAGGAACATATTCATATTAGCGGGGCAGAGCAACATGGCTGGTCGGGGCGGCGTGCTGAACAACACCGGCACGGGGATCGCCACGTGGGACGGCGTGGTTCCACCCCAGTCCCGTCCCAACCCCTCAGTCTTGAAGCTGGACGCGCACTTAACGTGGGTGGAGGCCCGTGAGCCACTGGACGCGGACATCGATTCTAGGAAGACAAATGGTGTTGGGCCAGGAATGGCATTTGCGAACTCGGTGTTGGAGAAGCACCCAGATTTTGGTCTGATTGGTTTGGTCCCTTGCGCGATTGGAGGCAGCAACATAAGCGAGTGGGAACGCGGAAAAGAGCTTTACTTTCAGATGATAAAGAGGGCCAAGGCATCGTTGCGTGACGGTGGCACCATTCGTGCATTGCTATGGTACCAAGGAGAAACCGATACAGTGAATTTACACGATGCTCAATCGTATCAAAGAAGAGTTCACAAGTTCTTCTTGGACGTTCGTGATGATCTACAGTCTCCGTTGCTTCCAATAATCCAGGTAGCTTTGGCATCTGGATCAGGCCCTCACATAGAGATAGTAAGACAAGCTCAGCTGGGCATTGACCTTCTAAACCTGAGAACTGTGGACGCTCATGGTTTGCCCCTTCAGCCCGATGGGCTGCATCTTTCAACCCCGGCCCAGGCTCATCTTGGGCAGATGATGGCTAATGCATTCCTTCAGTTCGTACCCTCTTCAAATGTAAATTACAAAGTTAGCCCAATTCTCAATGAGGCAATCAGGCTTTATAATTATGCCTTTTATGTTTGTATGCTCCCCTTGTTCATAACACTTTTCACAATTATGTACCCATCATTCTTATAG
Predicted protein sequences of Glyma04g04480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g04480.1 sequence type=predicted peptide gene model=Glyma04g04480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPCLLLLVFLIQSWAVKAQQVYDRNIFILAGQSNMAGRGGVLNNTGTGIATWDGVVPPQSRPNPSVLKLDAHLTWVEAREPLDADIDSRKTNGVGPGMAFANSVLEKHPDFGLIGLVPCAIGGSNISEWERGKELYFQMIKRAKASLRDGGTIRALLWYQGETDTVNLHDAQSYQRRVHKFFLDVRDDLQSPLLPIIQVALASGSGPHIEIVRQAQLGIDLLNLRTVDAHGLPLQPDGLHLSTPAQAHLGQMMANAFLQFVPSSNVNYKVSPILNEAIRLYNYAFYVCMLPLFITLFTIMYPSFL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
