Report for Sequence Feature Glyma04g04470
Feature Type: gene_model
Chromosome: Gm04
Start: 3327498
stop: 3329302
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g04470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G16150 AT
Annotation by Michelle Graham. TAIR10: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:5471794-5473033 FORWARD LENGTH=325
SoyBase E_val: 0 ISS
GO:0006516 GO-bp
Annotation by Michelle Graham. GO Biological Process: glycoprotein catabolic process
SoyBase N/A ISS
GO:0033345 GO-bp
Annotation by Michelle Graham. GO Biological Process: asparagine catabolic process via L-aspartate
SoyBase N/A ISS
GO:0051604 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein maturation
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004067 GO-mf
Annotation by Michelle Graham. GO Molecular Function: asparaginase activity
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG1592
KOG
Asparaginase
JGI ISS
PTHR10188 Panther
PROTEASE T2 ASPARAGINASE
JGI ISS
PF01112 PFAM
Asparaginase
JGI ISS
UniRef100_I1JTM6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTM6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2PW34 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: L-asparaginase 2 n=1 Tax=Phaseolus vulgaris RepID=Q2PW34_PHAVU
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g04470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g04470
Paralog Evidence Comments
Glyma06g04590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g04470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g042100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g04470
Coding sequences of Glyma04g04470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g04470.1 sequence type=CDS gene model=Glyma04g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGGGTTGGGCTATAGCGGTGCATGGTGGCGCAGGTGTGGACCCTAATCTCCCACCGGAGCGTCAAGATCAAGCCAAACAACTCCTCACTCGCGTTCTCAATCTTGGCATCTCTGCCCTTCGTTCCAATGCTTCTGCCCTCGATGTCGTCGAACTTGTCGTACGGGAACTGGAAACAGATCCACTGTTCAACTCTGGTCGCGGAGCTGCTCTGACAGAAAAGGGAACAGCGGAATTAGAAGCAAGCATCATGGATGGTTCCAATAGACGATGCGGCGCCGTTTCGGGCGTCACCACCGTCAAAAACCCCATCTCACTCGCTCGCCTTGTCATGGAAAACTCACCCCACTCCTACCTCGCCTTTAACGGCGCTGAAGATTTCGCCAGACAACAGGGTGTGGAGATTGTGGAGAACGAATACTTCATCACCCCTGAAAATGTTGGTATGCTGAAACTCGCAAAGGAAGCAAACGCAATCCTGTTTGATTATAGGGTTCCATTGCACAATGGATACGAAAGTTGCGGTGTGGAGGTTGAGAATCCGTTGCAAATGAATGGACTGCCGATCAGCGTGTACGCGCCGGAGACGGTGGGGTGCGTGGTGGTGGACAGAGAGGGGCGGTGTGCGGCCGCCACGTCGACAGGGGGATTGATGAACAAGAAGTGTGGTAGGATCGGTGACTCACCTCTGATAGGCGCAGGTACTTACGCGTGTAAGGTGTGTGGGGTGTCGTGCACTGGGGAAGGTGAGGCTATAATACGTGGTACGCTGGCGCGAGAGGTGGCGGCGGTGATGGAATACAAAGGACTGGAGCTTCAGGGGGCAGTGGACTTTGTGATGGAGCAGCGCCTTGAGGGAGGGAAGGCAGGGCTGATAGCGGTGTCGAATACTGGTGACGTGGCGTATGGATTCAACTCTAATGCCATGTTCAGGGCATGCGCCACCGAGGATGGATTCATGGAGGTTGGAATCTGGGAATAA
Predicted protein sequences of Glyma04g04470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g04470.1 sequence type=predicted peptide gene model=Glyma04g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGGWAIAVHGGAGVDPNLPPERQDQAKQLLTRVLNLGISALRSNASALDVVELVVRELETDPLFNSGRGAALTEKGTAELEASIMDGSNRRCGAVSGVTTVKNPISLARLVMENSPHSYLAFNGAEDFARQQGVEIVENEYFITPENVGMLKLAKEANAILFDYRVPLHNGYESCGVEVENPLQMNGLPISVYAPETVGCVVVDREGRCAAATSTGGLMNKKCGRIGDSPLIGAGTYACKVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLELQGAVDFVMEQRLEGGKAGLIAVSNTGDVAYGFNSNAMFRACATEDGFMEVGIWE*