Glyma04g04420 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g04420

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3278705
stop:	3280895
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60060	AT	Annotation by Michelle Graham. TAIR10: Serine/threonine-protein kinase WNK (With No Lysine)-related \| chr1:22139282-22141585 FORWARD LENGTH=386	SoyBase	E_val: 5.00E-73	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF3	Panther	NUCLEAR RECEPTOR BINDING PROTEIN-RELATED	JGI		ISS
UniRef100_Q2HTQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Basic helix-loop-helix protein, putative n=1 Tax=Medicago truncatula RepID=Q2HTQ7_MEDTR	SoyBase	E_val: 9.00E-125	ISS
UniRef100_UPI0002339505	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339505 related cluster n=1 Tax=unknown RepID=UPI0002339505	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04420

Paralog	Evidence	Comments
Glyma06g04550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g041700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04420

Limit To All Plant Sequences

>Glyma04g04420.3   sequence type=transcript   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGCTGCAAGAGGCCTGTGGGTACCATCACTTTTGTTTGTATTTTGCCTTTTAAATTTTAATCCTGTTGCCCCCATTCATTCCCCAACTCTCTTTACTCCGTGTCCGTAGAAGATGGAAAGTGGATTACCTTTGCTTAATTGTCTCTTGCAGCAGACTCTCAGAACCATTTGCACTTCTCCTAATTCTTCCACTCCTTCCAAGTGGGTATATGCTGTCTTCTGGAGGATATTACCTCGAAACTTTCCTCCACCGAGGTGGGAATTAGGAGGAACTGCTCTTGATCTCTCCAAAGGAAATAAAAGGAACTGGATCCTTGTCTGGGAAGATGGGTTCTGCGATTTTAACGAATGCGAGCAAAGGAAGAGTGGTAGTGGTTACTTGAACGGTAGATTTGGAGCTGAGTTATTCTTCAAGATGTCGCATGAGGTTTACAATTATGGAGAGGGACTCGTGGGGAAAGTTGCCGCAGATAATAGTCACAAATGGGTTTACAATGAGAGTCACAACGAGTGTGAGTCTAGCTATGTTGCTTCATGGAATGCTTCAGTCGAACCTCAACCAAAGGCGTGGGAGTTTCAGTTCAATTCAGGCATTCAGAGTATAGTCATAATCGCCGTCAGAGAAGGCGTAGTGCAATTGGGTTCTTTCAACAAGATAGCAGAGGACCTGAATCTGGTGATCAGCATACAAAGGCAATTCAGCTACCTTCAAAGCATACCTGGTGTGTTTGGTATTCAAAGACCATACTTACGACTCCAACACCCATACATTGTGAAGCCTAGTTTCATAGCAAGCAATGCAATGCCTCTATATGATATGGGGTGGAACACCCCACAGAATGGAGCACCAGGCCCATCTCTTTGTTCAGGGACACAAAGCATCATTGAGAGAGTGAAGATTGAAGATTGTGAATTTCATCCCACCCATGATGATGATCACAAAGTAAAGGTCGGTTCCTTGAACAAGTAGCATGGATTTGGAATTGGAAGATTAATTAAATTGAGACAGGAACCACTTTGACCACAATGACTTTTTAAATCATAGTCAATATGTTAAGAAAATGGTTAGTTATTTATTTTCTTTCACTTGGCCAGAATGTGTATTGTGGTATGTTTATTGGTGGCCGACAATTATCAATCATAGCGACCACTGTTACTGTTTCTTTCTGCGCGCATTTACGTTAATGATCAATGCAATGCAGACAATATTTTCTAGAACAAAAACTACATTAAGCTTTGCTACTTTTTCTGAAAAAGATAGTATATTGATGCTGCCTAACT

>Glyma04g04420.4   sequence type=transcript   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTTTTAAAAAATTACCTAAAATTTTTCTGTCACTAAGTTTAATATTTCTTACTATTAAGTTTTTCTGCTTGGACAGGTGGGAATTAGGAGGAACTGCTCTTGATCTCTCCAAAGGAAATAAAAGGAACTGGATCCTTGTCTGGGAAGATGGGTTCTGCGATTTTAACGAATGCGAGCAAAGGAAGAGTGGTAGTGGTTACTTGAACGGTAGATTTGGAGCTGAGTTATTCTTCAAGATGTCGCATGAGGTTTACAATTATGGAGAGGGACTCGTGGGGAAAGTTGCCGCAGATAATAGTCACAAATGGGTTTACAATGAGAGTCACAACGAGTGTGAGTCTAGCTATGTTGCTTCATGGAATGCTTCAGTCGAACCTCAACCAAAGGCGTGGGAGTTTCAGTTCAATTCAGGCATTCAGAGTATAGTCATAATCGCCGTCAGAGAAGGCGTAGTGCAATTGGGTTCTTTCAACAAGATAGCAGAGGACCTGAATCTGGTGATCAGCATACAAAGGCAATTCAGCTACCTTCAAAGCATACCTGGTGTGTTTGGTATTCAAAGACCATACTTACGACTCCAACACCCATACATTGTGAAGCCTAGTTTCATAGCAAGCAATGCAATGCCTCTATATGATATGGGGTGGAACACCCCACAGAATGGAGCACCAGGCCCATCTCTTTGTTCAGGTTCTCCTTCTCTACCATTACCAACCATGCCTTGCAATTTTGGAGCTTTGCTATCAAAGTTACCATCTGGAATCCCTTCCCATAATTCCACTCAAGTCCCTAATGCAGGGACACAAAGCATCATTGAGAGAGTGAAGATTGAAGATTGTGAATTTCATCCCACCCATGATGATGATCACAAAGTAAAGGTCGGTTCCTTGAACAAGTAGCATGGATTTGGAATTGGAAGATTAATTAAATTGAGACAGGAACCACTTTGACCACAATGACTTTTTAAATCATAGTCAATATGTTAAGAAAATGGTTAGTTATTTATTTTCTTTCACTTGGCCAGAATGTGTATTGTGGTATGTTTATTGGTGGCCGACAATTATCAATCATAGCGACCACTGTTACTGTTTCTTTCTGCGCGCATTTACGTTAATGATCAATGCAATGCAGACAATATTTTCTAGAACAAAAACTACATTAAGCTTTGCTACTTTTTCTGAAAAAGATAGTATATTGATGCTGCCTAACT

Coding sequences of Glyma04g04420

Limit To All Plant Sequences

>Glyma04g04420.2   sequence type=CDS   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGTGGATTACCTTTGCTTAATTGTCTCTTGCAGCAGACTCTCAGAACCATTTGCACTTCTCCTAATTCTTCCACTCCTTCCAAGTGGGTATATGCTGTCTTCTGGAGGATATTACCTCGAAACTTTCCTCCACCGAGGTGGGAATTAGGAGGAACTGCTCTTGATCTCTCCAAAGGAAATAAAAGGAACTGGATCCTTGTCTGGGAAGATGGGTTCTGCGATTTTAACGAATGCGAGCAAAGGAAGAGTGGTAGTGGTTACTTGAACGGTAGATTTGGAGCTGAGTTATTCTTCAAGATGTCGCATGAGGTTTACAATTATGGAGAGGGACTCGTGGGGAAAGTTGCCGCAGATAATAGTCACAAATGGGTTTACAATGAGAGTCACAACGAGTGTGAGTCTAGCTATGTTGCTTCATGGAATGCTTCAGTCGAACCTCAACCAAAGGCGTGGGAGTTTCAGTTCAATTCAGGCATTCAGAGTATAGTCATAATCGCCGTCAGAGAAGGCGTAGTGCAATTGGGTTCTTTCAACAAGATAGCAGAGGACCTGAATCTGGTGATCAGCATACAAAGGCAATTCAGCTACCTTCAAAGCATACCTGGTGTGTTTGGTATTCAAAGACCATACTTACGACTCCAACACCCATACATTGTGAAGCCTAGTTTCATAGCAAGCAATGCAATGCCTCTATATGATATGGGGTGGAACACCCCACAGAATGGAGCACCAGGCCCATCTCTTTGTTCAGGTTCTCCTTCTCTACCATTACCAACCATGCCTTGCAATTTTGGAGCTTTGCTATCAAAGTTACCATCTGGAATCCCTTCCCATAATTCCACTCAAGTCCCTAATGCAGGGACACAAAGCATCATTGAGAGAGTGAAGATTGAAGATTGTGAATTTCATCCCACCCATGATGATGATCACAAAGTAAAGGTCGGTTCCTTGAACAAGTAG

>Glyma04g04420.3   sequence type=CDS   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGTGGATTACCTTTGCTTAATTGTCTCTTGCAGCAGACTCTCAGAACCATTTGCACTTCTCCTAATTCTTCCACTCCTTCCAAGTGGGTATATGCTGTCTTCTGGAGGATATTACCTCGAAACTTTCCTCCACCGAGGTGGGAATTAGGAGGAACTGCTCTTGATCTCTCCAAAGGAAATAAAAGGAACTGGATCCTTGTCTGGGAAGATGGGTTCTGCGATTTTAACGAATGCGAGCAAAGGAAGAGTGGTAGTGGTTACTTGAACGGTAGATTTGGAGCTGAGTTATTCTTCAAGATGTCGCATGAGGTTTACAATTATGGAGAGGGACTCGTGGGGAAAGTTGCCGCAGATAATAGTCACAAATGGGTTTACAATGAGAGTCACAACGAGTGTGAGTCTAGCTATGTTGCTTCATGGAATGCTTCAGTCGAACCTCAACCAAAGGCGTGGGAGTTTCAGTTCAATTCAGGCATTCAGAGTATAGTCATAATCGCCGTCAGAGAAGGCGTAGTGCAATTGGGTTCTTTCAACAAGATAGCAGAGGACCTGAATCTGGTGATCAGCATACAAAGGCAATTCAGCTACCTTCAAAGCATACCTGGTGTGTTTGGTATTCAAAGACCATACTTACGACTCCAACACCCATACATTGTGAAGCCTAGTTTCATAGCAAGCAATGCAATGCCTCTATATGATATGGGGTGGAACACCCCACAGAATGGAGCACCAGGCCCATCTCTTTGTTCAGGGACACAAAGCATCATTGAGAGAGTGAAGATTGAAGATTGTGAATTTCATCCCACCCATGATGATGATCACAAAGTAAAGGTCGGTTCCTTGAACAAGTAG

>Glyma04g04420.4   sequence type=CDS   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCATGAGGTTTACAATTATGGAGAGGGACTCGTGGGGAAAGTTGCCGCAGATAATAGTCACAAATGGGTTTACAATGAGAGTCACAACGAGTGTGAGTCTAGCTATGTTGCTTCATGGAATGCTTCAGTCGAACCTCAACCAAAGGCGTGGGAGTTTCAGTTCAATTCAGGCATTCAGAGTATAGTCATAATCGCCGTCAGAGAAGGCGTAGTGCAATTGGGTTCTTTCAACAAGATAGCAGAGGACCTGAATCTGGTGATCAGCATACAAAGGCAATTCAGCTACCTTCAAAGCATACCTGGTGTGTTTGGTATTCAAAGACCATACTTACGACTCCAACACCCATACATTGTGAAGCCTAGTTTCATAGCAAGCAATGCAATGCCTCTATATGATATGGGGTGGAACACCCCACAGAATGGAGCACCAGGCCCATCTCTTTGTTCAGGTTCTCCTTCTCTACCATTACCAACCATGCCTTGCAATTTTGGAGCTTTGCTATCAAAGTTACCATCTGGAATCCCTTCCCATAATTCCACTCAAGTCCCTAATGCAGGGACACAAAGCATCATTGAGAGAGTGAAGATTGAAGATTGTGAATTTCATCCCACCCATGATGATGATCACAAAGTAAAGGTCGGTTCCTTGAACAAGTAG

Predicted protein sequences of Glyma04g04420

Limit To All Plant Sequences

>Glyma04g04420.2   sequence type=predicted peptide   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESGLPLLNCLLQQTLRTICTSPNSSTPSKWVYAVFWRILPRNFPPPRWELGGTALDLSKGNKRNWILVWEDGFCDFNECEQRKSGSGYLNGRFGAELFFKMSHEVYNYGEGLVGKVAADNSHKWVYNESHNECESSYVASWNASVEPQPKAWEFQFNSGIQSIVIIAVREGVVQLGSFNKIAEDLNLVISIQRQFSYLQSIPGVFGIQRPYLRLQHPYIVKPSFIASNAMPLYDMGWNTPQNGAPGPSLCSGSPSLPLPTMPCNFGALLSKLPSGIPSHNSTQVPNAGTQSIIERVKIEDCEFHPTHDDDHKVKVGSLNK*

>Glyma04g04420.3   sequence type=predicted peptide   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESGLPLLNCLLQQTLRTICTSPNSSTPSKWVYAVFWRILPRNFPPPRWELGGTALDLSKGNKRNWILVWEDGFCDFNECEQRKSGSGYLNGRFGAELFFKMSHEVYNYGEGLVGKVAADNSHKWVYNESHNECESSYVASWNASVEPQPKAWEFQFNSGIQSIVIIAVREGVVQLGSFNKIAEDLNLVISIQRQFSYLQSIPGVFGIQRPYLRLQHPYIVKPSFIASNAMPLYDMGWNTPQNGAPGPSLCSGTQSIIERVKIEDCEFHPTHDDDHKVKVGSLNK*

>Glyma04g04420.4   sequence type=predicted peptide   gene model=Glyma04g04420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHEVYNYGEGLVGKVAADNSHKWVYNESHNECESSYVASWNASVEPQPKAWEFQFNSGIQSIVIIAVREGVVQLGSFNKIAEDLNLVISIQRQFSYLQSIPGVFGIQRPYLRLQHPYIVKPSFIASNAMPLYDMGWNTPQNGAPGPSLCSGSPSLPLPTMPCNFGALLSKLPSGIPSHNSTQVPNAGTQSIIERVKIEDCEFHPTHDDDHKVKVGSLNK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain