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Report for Sequence Feature Glyma04g04400

Feature Type:gene_model
Chromosome:Gm04
Start:3269228
stop:3273095
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47128AT Annotation by Michelle Graham. TAIR10: Granulin repeat cysteine protease family protein | chr1:17283139-17285609 REVERSE LENGTH=462 SoyBaseE_val: 4.00E-165ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
GO:0008234GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity SoyBaseN/AISS
KOG1543 KOG Cysteine proteinase Cathepsin L JGI ISS
PTHR12411Panther CYSTEINE PROTEASE FAMILY C1-RELATED JGI ISS
PTHR12411:SF44Panther CATHEPSIN L-RELATED JGI ISS
PF00112PFAM Papain family cysteine protease JGI ISS
PF08246PFAM Cathepsin propeptide inhibitor domain (I29) JGI ISS
UniRef100_G7J6Z3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase n=1 Tax=Medicago truncatula RepID=G7J6Z3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JTM0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTM0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g04400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04400
ParalogEvidenceComments
Glyma06g04540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g041500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g04400
>Glyma04g04400.2   sequence type=transcript   gene model=Glyma04g04400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAACTTTAATTTTATATATTATCATCACTTCCGTGTTATGCCTTTATAAACCCCATAGCATCTCACTCCATTCACGAAACATCGAAACAAAAATAGAAAATGGGTACTAACAGATCTTTAATGGCCACGATCCTCATCGTGTTCTTCACGGTGTTGGCAGTGTCATCGGCGTTGGACATGTCGATAATCTCGTATGACAGAAGCCACGCGGACAAGTCAGGGTGGAAGAGTGACGAGGAGGTAATGAGTATATACGAGGAGTGGCTTGTGAAGCATGGGAAGGTGTATAACGCCGTCGAAGAGAAGGAGAAGAGGTTTCAGATCTTCAAAGACAACCTCAACTTTATCGAAGAACACAATGCTGTGAACCGGACATACAAGGTTGGACTGAACCGGTTCAGTGATCTTAGCAACGAGGAGTACCGGTCAAAATACCTGGGAACCAAGATTGATCCCAGCAGAATGATGGCCAGACCAAGTAGACGTTACTCTCCGCGCGTGGCTGACAATTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCTGTTGTCAGAGTCAAAAACCAATCAGAATGCGAGGGCTGCTGGGCATTCTCAGCAATTGCCGCAGTTGAAGGAATTAACAAGATAGTAACAGGCAATCTAACTGCACTGTCAGAGCAAGAACTGTTGGACTGTGATAGAACCGTCAATGCAGGATGTAGTGGCGGACTTGTGGACTATGCCTTTGAGTTCATTATCAACAATGGTGGCATTGACACTGAAGAGGATTACCCCTTTCAAGGTGCTGATGGTATCTGTGATCAATACAAGATAAATGCTAGAGCTGTTACAATTGATGGTTACGAACGTGTTCCTGCTTATGATGAATTAGCCTTGAAAAAGGCAGTAGCAAATCAACCCGTGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCTGTTGGGTACGGAACAGAAAATGGAATTGACTATTGGATCGTCAAAAATTCATGGGGTGAGAATTGGGGAGAGGCAGGTTATGTAAGAATGGAACGTAATATAGCAGAAGACACTGCAGGAAAGTGTGGAATTGCGATTCTGACATTGTATCCCATAAAGATTGGCCAAAATCCCTCAAACCCAGATAACTCCAGCTAAACCCACCGGGAATTTACAGGTAGGAACAAGATAAACTTTGCTTAAGCAAATCATGATCAACTTAGTACTCATTTCCTAGCTTTTATCTTGTAGAACAAGAAATGTGTTGGGATAGTGACGGATTAATGGTTTGTCATTTGCTTCACTCTCTTTATGTTGGTTGATGTATTATATTATAACTCTTAATTAACAAACATGTTGATTACTATTGGTTTCATACTTTTGTAGATTAATCTTTATATGATGTTGGAATAAAGTTGTTTATTCACATGATAATTTCTAATTCTAACCATGTAGAGCATAAAATAAAGTTAGGTATTTTAAGATTTAAAGTATAATCTTATAGAGACTATTTGATAAGTATTAATTAAGATCATTGAAACCTTTATTATTTAGATAATACAAAGGTAAAATTCGAAATAGATTAAAGATGACG
Coding sequences of Glyma04g04400
>Glyma04g04400.1   sequence type=CDS   gene model=Glyma04g04400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACTAACAGATCTTTAATGGCCACGATCCTCATCGTGTTCTTCACGGTGTTGGCAGTGTCATCGGCGTTGGACATGTCGATAATCTCGTATGACAGAAGCCACGCGGACAAGTCAGGGTGGAAGAGTGACGAGGAGGTAATGAGTATATACGAGGAGTGGCTTGTGAAGCATGGGAAGGTGTATAACGCCGTCGAAGAGAAGGAGAAGAGGTTTCAGATCTTCAAAGACAACCTCAACTTTATCGAAGAACACAATGCTGTGAACCGGACATACAAGGTTGGACTGAACCGGTTCAGTGATCTTAGCAACGAGGAGTACCGGTCAAAATACCTGGGAACCAAGATTGATCCCAGCAGAATGATGGCCAGACCAAGTAGACGTTACTCTCCGCGCGTGGCTGACAATTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCTGTTGTCAGAGTCAAAAACCAATCAGAATGCGAGGGCTGCTGGGCATTCTCAGCAATTGCCGCAGTTGAAGGAATTAACAAGATAGTAACAGGCAATCTAACTGCACTGTCAGAGCAAGAACTGTTGGACTGTGATAGAACCGTCAATGCAGGATGTAGTGGCGGACTTGTGGACTATGCCTTTGAGTTCATTATCAACAATGGTGGCATTGACACTGAAGAGGATTACCCCTTTCAAGGTGCTGATGGTATCTGTGATCAATACAAGATAAATGCTAGAGCTGTTACAATTGATGGTTACGAACGTGTTCCTGCTTATGATGAATTAGCCTTGAAAAAGGCAGTAGCAAATCAACCCGTGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCTGTTGGGTACGGAACAGAAAATGGAATTGACTATTGGATCGTCAAAAATTCATGGGGTGAGAATTGGGGAGAGGCAGGTTATGTAAGAATGGAACGTAATATAGCAGAAGACACTGCAGGAAAGTGTGGAATTGCGATTCTGACATTGTATCCCATAAAGATTGGCCAAAATCCCTCAAACCCAGATAACTCCAGCTAA

>Glyma04g04400.2   sequence type=CDS   gene model=Glyma04g04400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACTAACAGATCTTTAATGGCCACGATCCTCATCGTGTTCTTCACGGTGTTGGCAGTGTCATCGGCGTTGGACATGTCGATAATCTCGTATGACAGAAGCCACGCGGACAAGTCAGGGTGGAAGAGTGACGAGGAGGTAATGAGTATATACGAGGAGTGGCTTGTGAAGCATGGGAAGGTGTATAACGCCGTCGAAGAGAAGGAGAAGAGGTTTCAGATCTTCAAAGACAACCTCAACTTTATCGAAGAACACAATGCTGTGAACCGGACATACAAGGTTGGACTGAACCGGTTCAGTGATCTTAGCAACGAGGAGTACCGGTCAAAATACCTGGGAACCAAGATTGATCCCAGCAGAATGATGGCCAGACCAAGTAGACGTTACTCTCCGCGCGTGGCTGACAATTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCTGTTGTCAGAGTCAAAAACCAATCAGAATGCGAGGGCTGCTGGGCATTCTCAGCAATTGCCGCAGTTGAAGGAATTAACAAGATAGTAACAGGCAATCTAACTGCACTGTCAGAGCAAGAACTGTTGGACTGTGATAGAACCGTCAATGCAGGATGTAGTGGCGGACTTGTGGACTATGCCTTTGAGTTCATTATCAACAATGGTGGCATTGACACTGAAGAGGATTACCCCTTTCAAGGTGCTGATGGTATCTGTGATCAATACAAGATAAATGCTAGAGCTGTTACAATTGATGGTTACGAACGTGTTCCTGCTTATGATGAATTAGCCTTGAAAAAGGCAGTAGCAAATCAACCCGTGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTGGTATATTCACAGGAACATGTGGGACATCAATAGACCATGGTGTTACAGCTGTTGGGTACGGAACAGAAAATGGAATTGACTATTGGATCGTCAAAAATTCATGGGGTGAGAATTGGGGAGAGGCAGGTTATGTAAGAATGGAACGTAATATAGCAGAAGACACTGCAGGAAAGTGTGGAATTGCGATTCTGACATTGTATCCCATAAAGATTGGCCAAAATCCCTCAAACCCAGATAACTCCAGCTAA
Predicted protein sequences of Glyma04g04400
>Glyma04g04400.1   sequence type=predicted peptide   gene model=Glyma04g04400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTNRSLMATILIVFFTVLAVSSALDMSIISYDRSHADKSGWKSDEEVMSIYEEWLVKHGKVYNAVEEKEKRFQIFKDNLNFIEEHNAVNRTYKVGLNRFSDLSNEEYRSKYLGTKIDPSRMMARPSRRYSPRVADNLPESVDWRKEGAVVRVKNQSECEGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEFIINNGGIDTEEDYPFQGADGICDQYKINARAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGKEFQLYESGIFTGTCGTSIDHGVTAVGYGTENGIDYWIVKNSWGENWGEAGYVRMERNIAEDTAGKCGIAILTLYPIKIGQNPSNPDNSS*

>Glyma04g04400.2   sequence type=predicted peptide   gene model=Glyma04g04400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTNRSLMATILIVFFTVLAVSSALDMSIISYDRSHADKSGWKSDEEVMSIYEEWLVKHGKVYNAVEEKEKRFQIFKDNLNFIEEHNAVNRTYKVGLNRFSDLSNEEYRSKYLGTKIDPSRMMARPSRRYSPRVADNLPESVDWRKEGAVVRVKNQSECEGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEFIINNGGIDTEEDYPFQGADGICDQYKINARAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGKEFQLYESGIFTGTCGTSIDHGVTAVGYGTENGIDYWIVKNSWGENWGEAGYVRMERNIAEDTAGKCGIAILTLYPIKIGQNPSNPDNSS*






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