Glyma04g04310 - SoyBase

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Report for Sequence Feature Glyma04g04310

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3204870
stop:	3206428
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G46480	AT	Annotation by Michelle Graham. TAIR10: WUSCHEL related homeobox 4 \| chr1:17236903-17237953 REVERSE LENGTH=251	SoyBase	E_val: 1.00E-71	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010067	GO-bp	Annotation by Michelle Graham. GO Biological Process: procambium histogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
UniRef100_B9R791	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9R791_RICCO	SoyBase	E_val: 6.00E-104	ISS
UniRef100_I1JTL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTL5_SOYBN	SoyBase	E_val: 8.00E-165	ISS

Expression Patterns of Glyma04g04310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04310

Paralog	Evidence	Comments
Glyma06g04470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g040900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04310

Limit To All Plant Sequences

>Glyma04g04310.1   sequence type=CDS   gene model=Glyma04g04310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAGCATGAAGGTGCATCAGTTCACACGTGGATTAATCTGGGAGCACGAACCTTTCCTCACACTTGGCTGCAAGAGATTACGCCCTCTTGCTCCCAAGCTTCCCAACACCAAAACTATCACTACCCCTTTCGATCTCAAGAGCTTCATCAGGCCCGAAAGTGGCCCCAGAAAACCCGTTTCCTCTGACGACACTAAGAAGGATCCACCTTCACCCCAAGGCCAGATTGAAACGCACCCAGGAGGGACACGGTGGAATCCTACGCAAGAACAGATAGGCATATTGGAGATGTTGTACAAAGGAGGGATGCGAACTCCGAATGCTCAACAGATAGAGCAGATCACTGTCCAGCTTGGAAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAGCAGCCTTGCATCTTCTCATAGTCCTCGAACTCCCACAATTCACAGTGTTGTTACTTTGGAGACAACAAGGGGGGAAGTGGTAGAGAGAGATCACGAGGAAGATAGTCCGTACAAGAAGAAGTGCAGGAGATGGGTATTTGACTGCTTGGAAGAACAAAACATGTCATCACCTTGTGAACAAGAGGAACATAGAACTCTGGAGCTTTTTCCATTGCACCCGGAAGGCAGATGA

Predicted protein sequences of Glyma04g04310

Limit To All Plant Sequences

>Glyma04g04310.1   sequence type=predicted peptide   gene model=Glyma04g04310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSMKVHQFTRGLIWEHEPFLTLGCKRLRPLAPKLPNTKTITTPFDLKSFIRPESGPRKPVSSDDTKKDPPSPQGQIETHPGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRSSLASSHSPRTPTIHSVVTLETTRGEVVERDHEEDSPYKKKCRRWVFDCLEEQNMSSPCEQEEHRTLELFPLHPEGR*

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