Glyma04g04300 - SoyBase

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Report for Sequence Feature Glyma04g04300

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3192396
stop:	3197064
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23350	AT	Annotation by Michelle Graham. TAIR10: poly(A) binding protein 4 \| chr2:9943209-9946041 FORWARD LENGTH=662	SoyBase	E_val: 0	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0123	KOG	Polyadenylate-binding protein (RRM superfamily)	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF69	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF00658	PFAM	Poly-adenylate binding protein, unique domain	JGI		ISS
UniRef100_Q00M91	UniRef	Annotation by Michelle Graham. Best UniRef hit: Poly(A)-binding protein n=1 Tax=Glycine max RepID=Q00M91_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q00M91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Poly(A)-binding protein n=1 Tax=Glycine max RepID=Q00M91_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04300

Paralog	Evidence	Comments
Glyma06g04460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g040700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04300

Limit To All Plant Sequences

>Glyma04g04300.2   sequence type=transcript   gene model=Glyma04g04300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAAGTTCAGGATTCTACTATATAGGTCATACCCTTCAGGAGAGTCCAGTGCGGTGCTACTATCCTTCTTTTTCGTTACTGCACCGATCGCCTCTCTCTCCGGCGTAATTTACCCTAAAAGAAAAGGAAAAAAAAATTATTACGAACCCAAAAAGTTTTCAGTTTCTACAATATCTTTCTCCGAACAGAAATTCCTTATTAAATACTTAGTTAGGGTTTAACACTTCTGATACTTAATCTACGTCAAGTTGTGCTTCAACCTATTACCGCATTCAATTTACCAGAAAAAAAAAAAAAAGAAATGGCTCAAGTTCTTGAGAACCCCACCATTGACGCGGCGGCTTCCGGCGCGAACCCCTCGCTGACGACCATCTCGTTGTACGTCGGGGATCTTCACCACGACGTCAACGATCCGCAGCTGTATGATCTCTTCAACCAGGTTGCCCAAGTCGTTTCCGTTCGAATTTGCAGGGACGTGGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGCAACGCTCACGATGCCGCAAAAGCAATTGATGTGCTGAATTTCACTCCACTGAACGGCAAAATCATTAGGATAATGTACTCTATTCGGGACCCTAGTGCTCGGAAGAGTGGTGCAGCTAATGTTTTCATAAAGAATTTGGACAAGGCGATTGATCACAAGGCTTTGTACGATACATTTTCGGCTTTTGGGAATATTCTATCTTGCAAGGTTGCGACAGATGCTTCTGGCCAGTCTAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCAATTGACAAGTTAAACGGCATGCTGATCAATGATAAGCAGGTCTTTGTGGGTCCTTTCCTGCGGAAGCAGGATAGAGAGAGTGCTCTCAGTGGCACAAAGTTTAATAACGTTTTCGTGAAAAACCTGTTGGATTCAATGACTGAGGCTGACTTGGAGAGAATTTTTGGAGAATATGGAGCTATTACTAGCGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAAGGTTTTGGTTTTGTCAATTTTGCAAATGTAGACGATGCTGCTAAAGCTGTGGAGGCTCTTAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGGGCAACATGAACAGATTACAAAGGAGACTGTTGATAAATATCATGGTACAAACTTGTATATCAAGAACTTGGATGATAGTGTTGGTGATGAAGAACTCATGGAACTGTTCTCTGAGTTTGGTACGATAACCTCATGCAAGGTTATGCGAGATCCAAATGGAATTAGTAGAGGATCTGGATTTGTTTCATTTTCAATTGCTGAGGGAGCAACTCGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCACAATCGAGGCCTGCTGCAATAACCCCTAATGTTTCACCTCGAATGCCTCTATACCCTCTAGGGGCTCCTGCGATAGGACAACAATTTTTGTATGGGCAAGCAGCTCCAGCCACGATACCTCAACAGCATTTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCAGGGTCAACAGGGACAGCGCCCAGGAGGACACCGAGGATCAGGTCCTATGCAACAGCTCCAGCAGCCATTGCCATTGATGCACCAACAGATGCTTCCAAGGGGACATGTCTATCGATATCCTTCTGGCTCCAATATGCAAAATATTCAACTGGCAGGAGTACCTGGAGGAATGGTCACTTATGGCATTGGTCAACAAATGCCCACGCAGGCCCTGGCCTCGGCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGAAGCAGCAGCAAAGGTTACTGGTATGCTCTTAGAGATGGATCAGCCTGAGGTATTACATCTGATTGAGTCACCGGATGCTCTCAAGGCTAAAGTTGTTGAGGCCATGGATGTGTTGAAGAAAGTTACACAGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGAATGATAATGTCGAGTCTTAAGATTATGTATGCCAGTTTACAGGAATACACATGTTCTTAAAACAGTCACAGTTGTGTTTCTGGTTTTTTTGTAGGATTAGCAAACACTCCTTGGAGTAACTTATTGATTTGCATTTTGATTTGGTTTCTCTTCACTACTGCTTAGTTTGACATGGCCGTCCTATTTTGGCCCCAGTTTTCTTTAAAAAAATAATGGCTTCCAGCTTTTAACCGTGTTTCGTGCTAACTTTAATTTCCC

Coding sequences of Glyma04g04300

Limit To All Plant Sequences

>Glyma04g04300.1   sequence type=CDS   gene model=Glyma04g04300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGTTCTTGAGAACCCCACCATTGACGCGGCGGCTTCCGGCGCGAACCCCTCGCTGACGACCATCTCGTTGTACGTCGGGGATCTTCACCACGACGTCAACGATCCGCAGCTGTATGATCTCTTCAACCAGGTTGCCCAAGTCGTTTCCGTTCGAATTTGCAGGGACGTGGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGCAACGCTCACGATGCCGCAAAAGCAATTGATGTGCTGAATTTCACTCCACTGAACGGCAAAATCATTAGGATAATGTACTCTATTCGGGACCCTAGTGCTCGGAAGAGTGGTGCAGCTAATGTTTTCATAAAGAATTTGGACAAGGCGATTGATCACAAGGCTTTGTACGATACATTTTCGGCTTTTGGGAATATTCTATCTTGCAAGGTTGCGACAGATGCTTCTGGCCAGTCTAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCAATTGACAAGTTAAACGGCATGCTGATCAATGATAAGCAGGTCTTTGTGGGTCCTTTCCTGCGGAAGCAGGATAGAGAGAGTGCTCTCAGTGGCACAAAGTTTAATAACGTTTTCGTGAAAAACCTGTTGGATTCAATGACTGAGGCTGACTTGGAGAGAATTTTTGGAGAATATGGAGCTATTACTAGCGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAAGGTTTTGGTTTTGTCAATTTTGCAAATGTAGACGATGCTGCTAAAGCTGTGGAGGCTCTTAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGGGCAACATGAACAGATTACAAAGGAGACTGTTGATAAATATCATGGTACAAACTTGTATATCAAGAACTTGGATGATAGTGTTGGTGATGAAGAACTCATGGAACTGTTCTCTGAGTTTGGTACGATAACCTCATGCAAGGTTATGCGAGATCCAAATGGAATTAGTAGAGGATCTGGATTTGTTTCATTTTCAATTGCTGAGGGAGCAACTCGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCACAATCGAGGCCTGCTGCAATAACCCCTAATGTTTCACCTCGAATGCCTCTATACCCTCTAGGGGCTCCTGCGATAGGACAACAATTTTTGTATGGGCAAGCAGCTCCAGCCACGATACCTCAAGCTGCATTTGGTTACCAGCAGCATTTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCAGGGTCAACAGGGACAGCGCCCAGGAGGACACCGAGGATCAGGTCCTATGCAACAGCTCCAGCAGCCATTGCCATTGATGCACCAACAGATGCTTCCAAGGGGACATGTCTATCGATATCCTTCTGGCTCCAATATGCAAAATATTCAACTGGCAGGAGTACCTGGAGGAATGGTCACTTATGGCATTGGTCAACAAATGCCCACGCAGGCCCTGGCCTCGGCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGAAGCAGCAGCAAAGGTTACTGGTATGCTCTTAGAGATGGATCAGCCTGAGGTATTACATCTGATTGAGTCACCGGATGCTCTCAAGGCTAAAGTTGTTGAGGCCATGGATGTGTTGAAGAAAGTTACACAGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGAATGATAATGTCGAGTCTTAA

>Glyma04g04300.2   sequence type=CDS   gene model=Glyma04g04300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGTTCTTGAGAACCCCACCATTGACGCGGCGGCTTCCGGCGCGAACCCCTCGCTGACGACCATCTCGTTGTACGTCGGGGATCTTCACCACGACGTCAACGATCCGCAGCTGTATGATCTCTTCAACCAGGTTGCCCAAGTCGTTTCCGTTCGAATTTGCAGGGACGTGGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGCAACGCTCACGATGCCGCAAAAGCAATTGATGTGCTGAATTTCACTCCACTGAACGGCAAAATCATTAGGATAATGTACTCTATTCGGGACCCTAGTGCTCGGAAGAGTGGTGCAGCTAATGTTTTCATAAAGAATTTGGACAAGGCGATTGATCACAAGGCTTTGTACGATACATTTTCGGCTTTTGGGAATATTCTATCTTGCAAGGTTGCGACAGATGCTTCTGGCCAGTCTAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCAATTGACAAGTTAAACGGCATGCTGATCAATGATAAGCAGGTCTTTGTGGGTCCTTTCCTGCGGAAGCAGGATAGAGAGAGTGCTCTCAGTGGCACAAAGTTTAATAACGTTTTCGTGAAAAACCTGTTGGATTCAATGACTGAGGCTGACTTGGAGAGAATTTTTGGAGAATATGGAGCTATTACTAGCGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAAGGTTTTGGTTTTGTCAATTTTGCAAATGTAGACGATGCTGCTAAAGCTGTGGAGGCTCTTAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGGGCAACATGAACAGATTACAAAGGAGACTGTTGATAAATATCATGGTACAAACTTGTATATCAAGAACTTGGATGATAGTGTTGGTGATGAAGAACTCATGGAACTGTTCTCTGAGTTTGGTACGATAACCTCATGCAAGGTTATGCGAGATCCAAATGGAATTAGTAGAGGATCTGGATTTGTTTCATTTTCAATTGCTGAGGGAGCAACTCGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCACAATCGAGGCCTGCTGCAATAACCCCTAATGTTTCACCTCGAATGCCTCTATACCCTCTAGGGGCTCCTGCGATAGGACAACAATTTTTGTATGGGCAAGCAGCTCCAGCCACGATACCTCAACAGCATTTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCAGGGTCAACAGGGACAGCGCCCAGGAGGACACCGAGGATCAGGTCCTATGCAACAGCTCCAGCAGCCATTGCCATTGATGCACCAACAGATGCTTCCAAGGGGACATGTCTATCGATATCCTTCTGGCTCCAATATGCAAAATATTCAACTGGCAGGAGTACCTGGAGGAATGGTCACTTATGGCATTGGTCAACAAATGCCCACGCAGGCCCTGGCCTCGGCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGAAGCAGCAGCAAAGGTTACTGGTATGCTCTTAGAGATGGATCAGCCTGAGGTATTACATCTGATTGAGTCACCGGATGCTCTCAAGGCTAAAGTTGTTGAGGCCATGGATGTGTTGAAGAAAGTTACACAGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGAATGATAATGTCGAGTCTTAA

Predicted protein sequences of Glyma04g04300

Limit To All Plant Sequences

>Glyma04g04300.1   sequence type=predicted peptide   gene model=Glyma04g04300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQVLENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATIPQAAFGYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRPGGHRGSGPMQQLQQPLPLMHQQMLPRGHVYRYPSGSNMQNIQLAGVPGGMVTYGIGQQMPTQALASALANATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLKKVTQQQSNSPADQLASLSLNDNVES*

>Glyma04g04300.2   sequence type=predicted peptide   gene model=Glyma04g04300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQVLENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATIPQQHFVPGMRPGGAPNFYVPLVQQGQQGQRPGGHRGSGPMQQLQQPLPLMHQQMLPRGHVYRYPSGSNMQNIQLAGVPGGMVTYGIGQQMPTQALASALANATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLKKVTQQQSNSPADQLASLSLNDNVES*

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