Glyma04g04210 - SoyBase

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Report for Sequence Feature Glyma04g04210

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3112228
stop:	3119091
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42940	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:17216649-17219171 REVERSE LENGTH=691	SoyBase	E_val: 5.00E-88	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_Q00M82	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein 2 n=1 Tax=Glycine max RepID=Q00M82_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339502	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339502 related cluster n=1 Tax=unknown RepID=UPI0002339502	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g04210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g039700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04210

Limit To All Plant Sequences

>Glyma04g04210.1   sequence type=CDS   gene model=Glyma04g04210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCATCCTATGACAATTCTATTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGTAATACACCAAATGAGATTAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGCCTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATCTACATCTGTAGCCCCAATTCTCATTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATGATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAAACGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGCCTTCCTGGTAGAAGATACTGATGGTAGGCCTAGTTGTTCTCTTGATACTCGGCGGGTCTCTTGTAAACGAAAGGCTGTTGAAGGAAATAATGGACAATCGTCAGATGCTGGGAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCATGGCACACCATTCCTACTCAGGATAATGCTGGAAGCAGTTCGAGAAGATCTATTCCCTCAGAAGAGGTAAACGCAAGACTTGGCCTGGGTATCGGGGATGAAGCATCTGAAAATGTTTCTGATTCAAAAACTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCCAGCAAATTCTGTTCCTCCCACCGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTCCATCCTCTCAAGTATCACAAAGACTTCATTCTGTTAATAATTCTCTGAACTCGAGGTCGGCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACATGTAATCCATGTCCCTGCTTTGCCCAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAATTATATCCCCAGCCAGGGATCAGGAGGATGCAAGCTCAAGAAGAATGTCCAGAAATATGTTAGAACATCCAGTCTTTCAACCTGCAACTGATTTAAGAAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGTAAATTTAAGTATTCCAGGAAATGTTGCTTCATCACGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCTCCTCCTAATCCTCCACAGCATCCACGGAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCCAGTTCTGATGCTATTGGAAGTCCAAGCAATAATTATTCTTCCTTGCGCTCTGGTTTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGAGTGGGGCAAACCCGAGATCATCTTCATGGTTGGAGAGGCAAGGAGGTAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCACAATGTTTTGGGCCGAATGCGTAGAGGTGGGAACATGCGATTTGAGGATGTTGTGATCCTTGAGCATCAATCATTTCTTTCTGGAATAGCTGATGTTCATGATCGACACGGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCCTATCGAAACTCTTGAAACAGAGAAAGCACTCGGTTGAAAAAGGGTCTGAGACTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGGAATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGCTAATGCAAAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA

Predicted protein sequences of Glyma04g04210

Limit To All Plant Sequences

>Glyma04g04210.1   sequence type=predicted peptide   gene model=Glyma04g04210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSSYDNSIINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWSSTITAGALAGPSLEERRLEPTNALSLDNVNTGPIYICSPNSHLMSQNLNLNAGLADSGSDDSQHLELPNLNKSSGSANECIPPNVGSGSFLLPSGNNAFLVEDTDGRPSCSLDTRRVSCKRKAVEGNNGQSSDAGSSSYSQHTDGSAWHTIPTQDNAGSSSRRSIPSEEVNARLGLGIGDEASENVSDSKTAGSSESFHRNFRLRLNPSNPANSVPPTAFSTGSMIRHSGVSPSSQVSQRLHSVNNSLNSRSAPPIDNVVPQSQPHVIHVPALPRNRQSFRWSGGSSSRNIHSSNSIISPARDQEDASSRRMSRNMLEHPVFQPATDLRNLVQNPTVRASSSSSVNLSIPGNVASSRTGSNPATNPSSAPTWVSPPNPPQHPRRLSEYVRRSLFSPSSDAIGSPSNNYSSLRSGFSTSEPRALSSGSGANPRSSSWLERQGGSEFGIPYSLRTLAVASEGSSRLVSELHNVLGRMRRGGNMRFEDVVILEHQSFLSGIADVHDRHGDMRLDVDNMSYEELLALEERIGNVSTGLSEETLSKLLKQRKHSVEKGSETDAEPCCVCQEDYGDGNDIGTLDCGHDFHSSCIKQWLMQKNLCPICKTTGLAT*

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