Report for Sequence Feature Glyma04g04180
Feature Type: gene_model
Chromosome: Gm04
Start: 3063463
stop: 3068906
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g04180
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G42920 AT
Annotation by Michelle Graham. TAIR10: THO complex, subunit 5 | chr5:17206310-17209522 REVERSE LENGTH=819
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2216
KOG
Conserved coiled/coiled coil protein
JGI ISS
PTHR13375 Panther
FMS INTERACTING PROTEIN
JGI ISS
PF09766 PFAM
Fms-interacting protein
JGI ISS
UniRef100_I1JTK1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTK1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q00M79 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein-like protein n=1 Tax=Glycine max RepID=Q00M79_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g04180
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g04180
Paralog Evidence Comments
Glyma06g04360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g04180 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g039400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g04180
Coding sequences of Glyma04g04180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g04180.1 sequence type=CDS gene model=Glyma04g04180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGACGGTGAGATTGAAGAGGGATCAATAGGCGGTGTAGAGGAAGAGGAACAATCACCAGAGCCTCACAAGTCGGAGGAATCGCCCTACCAAATGTTGCGCAACAGCAAGGCCTCCGTACAGAACATTGTCGCCGATATGCTCTCCATTAAAAAAGAGGGTAAACCCAAGCAACTACTTCGAGATCTCGTTACTCAGATGTTCCTACATTTCATCACTCTCCGCCAGGCAAATCGCAGTATTTTGCTGGAGGAAGACCGCGTGAAAACCGAAACGGAGCGTGCCAAGGCGCCGGTGGATTTCACCACGCTGCAGCTTCACAACCTCATGTACGAGAAAAGCCACTACGTTAAGGCGATCAAGGCCTGCAAAGACTTCAAGTCCAAATATCCTGACATTGACCTTGTTCCTGAGGAGGACTTTTTCCGCGACGCTCCTCAAGATATCCAGGACTGCTTCTTGTCCAACGACGCCGCGCACAATCTCATGCTCAGAAGGCTCAATTTCGAGCTATTCCAGCGCAAAGAACTCTGCAAACTTCATGAGAAATTGGAACAACAAAAGAAAATCCTTTTGGAGACTATTGCAAACCGAAAGAAGTTCCTGACCAGTCTCCCTTCACATCTAAAGTCTCTCAAGAAAGCCTCCTTGCCTGTACAAAACCAGCTAGGGCTTCATCATACAAAGAGATTAAAGCAGCATCATTCAGCAGAGTTGCTTCCTCCAGCTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAGGAGGCCTTTGGAGAACCCATTGATCTGGAGATTATAGGAAGCCTGAAGGATGCTCAAGCTTTTGCTCGTCAACAAGCTCACAAGGACACTGACATTTCCACTACCGTGGAGAGTTCCAAATTGGAAGATGATGCTCCTGATGAAGAAGAAGATGGTCAGAGACGGAGAAAAAGGCCAAGGAGGGTTCAAGCCAAGGAGAGCCTTGACCAGGGGGGAATATATCAAGTTCACCCACTAAAAATCATTATCCATGTGTATGAAGATGAGGCTTCGGGTCCTAAATCTGCAAAACTCATTACTCTAAGGTTCGAGTACTTGGTGAAGTTGAATGTTGTATGTGTTGGAATAGAAGGATCTAATGATGCTCCAGAGAATGACCTCTTATGCAATTTATTCCCTAATGATACGGGACTTGAGCTTCCTCACCAGTCAGCCAAACTCTTTGTTCAAGATGCTATAACATTCAATACTCAAAGAACCTCACGTCCTTATAGATGGGCTCAGCACCTGGCAGGGATTGATTTCTTGCCTGAGATGTCTCCCTTGCTTCTTACTGACAACAGTGGAGCAGCCAAGAATGAAAATGTTATATCTGGTCTTTCACTATATCGCCAGCAGAACCGAGTACCGACAGTTCTGCAGAGAATTCGTGCAAGAAGAAAAGCTCAATTGGCCCTTCTGGAACAGCTAGAATCTCTCACTAAGCTAGAGTGGCCTCGTTTGCCCTGCAAAAGTGTTCCATGGGCTTTACACACTCCTTTGTGCAATTTGGACAGTTGGTCACCTGTAAAACTTCCACCTGTACCTAGAGAGTCCTCATCTCCTGCTGTCATAGATAAAGAAGAGCATATTCAGGAAGCAATGGATGCTGATGTAATTGAACGATCTGGTGCCACAAAAGCAGAACCAGAGAGTATAACAGAAGATGGGGAGCTTCCAACGTTGCTTCCTAAAGTGTCTAAGCTTGGCCTTTCCGCACAACTGAACTTAATTTCAAAAAGTATCGTTCCTCCACTCAATAAAATCAGGTCACAAAGTTTCAAAAAGATTGATGATAGTTCTGATTTCTTGCTGGATACTGAAAGTGATCTTGATGAGCCGGCACAGATTGAACAAGAACATGAAAAATCCAATTATCATGCCAGAAAGTCTGTTTCATGGATGAATTACGGGCTCAAGGAATTTCACTTAGTTATTTGCAGAAAAATCGGTACAGATGAGAGCAATTTGAATTTAGAAGCCAAGATCCAGATCAGTATGGAATATCCTCTAAGGCCTCCTCTTTTTCTATTGAGCATTAGTTGTATATCGTCTGGGGAAAACCATGATGAGACAGGATTGGAGTGGTACAATGAACTTCGTGCAATGGAAGCAGAGGTCAATCTACACTTACTAAAGATGTTAACTGTCAATCAAAAAAATTTTGTATTGGCTCATCAAGTGAGTTGTCTTGCTATGTTGTTTGACTATTATTTGGATGAGGCATCCCCATCATCTGAAAGGACAAATTGTACTTCCGTGGTTGATGTTGGCTTATGCAAGCCTGTTTCTGGTAGATTCCTGGGTAGATCTTTTAGAGGAAGGGATCGCAGGAAGATGATCTCATGGAAAGACATGAAACTTAATTCCAGCTGTATCTAA
Predicted protein sequences of Glyma04g04180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g04180.1 sequence type=predicted peptide gene model=Glyma04g04180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDGEIEEGSIGGVEEEEQSPEPHKSEESPYQMLRNSKASVQNIVADMLSIKKEGKPKQLLRDLVTQMFLHFITLRQANRSILLEEDRVKTETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACKDFKSKYPDIDLVPEEDFFRDAPQDIQDCFLSNDAAHNLMLRRLNFELFQRKELCKLHEKLEQQKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGLHHTKRLKQHHSAELLPPALYVIYSQLLAQKEAFGEPIDLEIIGSLKDAQAFARQQAHKDTDISTTVESSKLEDDAPDEEEDGQRRRKRPRRVQAKESLDQGGIYQVHPLKIIIHVYEDEASGPKSAKLITLRFEYLVKLNVVCVGIEGSNDAPENDLLCNLFPNDTGLELPHQSAKLFVQDAITFNTQRTSRPYRWAQHLAGIDFLPEMSPLLLTDNSGAAKNENVISGLSLYRQQNRVPTVLQRIRARRKAQLALLEQLESLTKLEWPRLPCKSVPWALHTPLCNLDSWSPVKLPPVPRESSSPAVIDKEEHIQEAMDADVIERSGATKAEPESITEDGELPTLLPKVSKLGLSAQLNLISKSIVPPLNKIRSQSFKKIDDSSDFLLDTESDLDEPAQIEQEHEKSNYHARKSVSWMNYGLKEFHLVICRKIGTDESNLNLEAKIQISMEYPLRPPLFLLSISCISSGENHDETGLEWYNELRAMEAEVNLHLLKMLTVNQKNFVLAHQVSCLAMLFDYYLDEASPSSERTNCTSVVDVGLCKPVSGRFLGRSFRGRDRRKMISWKDMKLNSSCI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
