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Report for Sequence Feature Glyma04g04160

Feature Type:gene_model
Chromosome:Gm04
Start:3043069
stop:3048044
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G45230AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3223) | chr1:17169874-17171381 REVERSE LENGTH=219 SoyBaseE_val: 1.00E-70ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF11523PFAM Protein of unknown function (DUF3223) JGI ISS
UniRef100_C6T0K2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T0K2_SOYBN SoyBaseE_val: 9.00E-154ISS
UniRef100_G7J6E2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein DCL n=1 Tax=Medicago truncatula RepID=G7J6E2_MEDTR SoyBaseE_val: 1.00E-84ISS

Expression Patterns of Glyma04g04160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04160
ParalogEvidenceComments
Glyma06g04340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g039200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g04160
>Glyma04g04160.1   sequence type=CDS   gene model=Glyma04g04160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGATTTCAACTTCAACCATGGCTTTGGCTTCTTTACTACCCAAAACGGCACCGCATGTCCTTTCCCTCACAAACCCTTCCGCTTCCACTCCCTTCATCTTACCTTTCAGTTTCCACTGTTTGCCTCACCCTCCTCTTCTCTCTGCCCTCAAAGCTAGTTCCTCCGGTGGCGACGATTTACGCGGCAAGCCCCTGCTTTCTCAGGGAATTGGAAAGGGAATTTTGGAGGAACATGCCTTTGAAGACGACGACGACGACAAATGGGTTGATTGGGAGGACCAGATTTTGGAGGACACCGTTCCTCTCGTCGGCTTCGTCAGAATGATTCTTCACTCTGGACAATATGACAATGGAGATAGACTAAGTGCAGAGCATGAGAAAACCATTATTGAGAAGCTGCTTCCCTTTCATCCAGAATTTGAGAAAAAGATCGGAAGTGGAGTTGATTATATCACTATTGGATATCATCCTGATTTTGAACGCTCTAGGTGTTTGTTCATAGTACGAGAAGATGGAGAGCTGGTTGATTTTTCATATTGGAAATGCATAAAGGGCTTGATCAGAAAGAACTATCCATTATATGCAGACAGTTTCATTCTCAGACATTTCAGGAAGAAGAGTCGTAATTTGTGA
Predicted protein sequences of Glyma04g04160
>Glyma04g04160.1   sequence type=predicted peptide   gene model=Glyma04g04160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMISTSTMALASLLPKTAPHVLSLTNPSASTPFILPFSFHCLPHPPLLSALKASSSGGDDLRGKPLLSQGIGKGILEEHAFEDDDDDKWVDWEDQILEDTVPLVGFVRMILHSGQYDNGDRLSAEHEKTIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVREDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNL*






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