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Report for Sequence Feature Glyma04g04131

Feature Type:gene_model
Chromosome:Gm04
Start:3028845
stop:3031870
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04131
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07700AT Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr1:2380214-2381127 FORWARD LENGTH=204 SoyBaseE_val: 2.00E-73ISS
GO:0006662GO-bp Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process SoyBaseN/AISS
GO:0010264GO-bp Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process SoyBaseN/AISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0015035GO-mf Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity SoyBaseN/AISS
KOG0907 KOG Thioredoxin JGI ISS
PTHR10438Panther THIOREDOXIN-RELATED JGI ISS
PTHR10438:SF16Panther THIOREDOXIN - RELATED JGI ISS
PF00085PFAM Thioredoxin JGI ISS
UniRef100_G7J6D9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin H-type 3 n=1 Tax=Medicago truncatula RepID=G7J6D9_MEDTR SoyBaseE_val: 9.00E-78ISS
UniRef100_I1K7Z7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K7Z7_SOYBN SoyBaseE_val: 6.00E-143ISS

Expression Patterns of Glyma04g04131
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04131 not represented in the dataset
Glyma04g04131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04131
ParalogEvidenceComments
Glyma06g04300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04131 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g038900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04131
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g04131
>Glyma04g04131.2   sequence type=transcript   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGATATGGGGAATGCGCGTGTCTTCTCCTCATTCGAAGTTTGCTGTGCATAGATATGGCAAAACCGCGCTTTTTGGTTTCGACGATTCCTGTGTCTGTCAGGGCTGAGTGGGTGTGCAATGTTATAAGGGTTTCTGAATTCTGATTGCTGCTCCTTCAAAATTAAAGATCATGTTCTCTCAAGAGTCAAGACTATGTTTGGCTTCCAGTTTGAAATGCTTACACAATCATGGCTGTATCTAATCTTTGTGTTTTTATATAAACATCAATGTCCATTGAAGCACAACCATTTGTAATCATTTCTCCATCTGCCAAATAGTTCACATTTTAGAGATTTTGTTTGTAGCCACTCTAGCTTGGGAAAGTCATTCTCGTTATTGGTCATTGTCTTACCTTTTTACCCCATGATGCTTGTATGTGGCATTGGTACCTTATCACTTAGCTCAGACAAGTGCCTAAGAAATGCGTGAATCAATTCAAACACAGTATTCTTTTCTATGAGGTACCAGCACCACCAGCTATCAGTTAACTTATCAAAATTTTCTCTTCCAAACTCTTGATTACGAGCCTTGAAAGATTTTGCATGCAAAAGATGCCACCGGTTATCATTCCCGGGCAGAATAGCAAGTCCTTTGTCAGTGTTAGACTAGACATACAGAAACAAGTTGAGTGTAGAATTTCCCGTGCAGTTTTCAGCTTGGTTCCTAGGCACATTCATGGCAAACTATGCTTTGGTGGTACAAAAGTTGAACCTCTAGTAAAAATCAGGCACACATTCTGCCCTAGCAGGATAAGAGTTGCCGAAGAATATCAAGAAGGTTTGTCTGATGAAGATGATGATCTCTGTCCCGTCGAATGTGTAAGAGAATTCACCACTGATGAAGAGTTCAGCAAAATTCTGGACAAGGCTAAAGAAACTGGATCTTTGGTGGTGGTAGATTTCTTTCGCACCTCTTGTGGAAGCTGCAAGTATATAGAGCAGGGTTTTGCAAAACTGTGCAAGAAATCTGGTGATCATGAAGCTCCAGTAATCTTTCTAAAGCATAATGTAATGGATGAGTATGACGAGCAATCCGAGGTTGCTGACCGACTTAGAATCAGGGCCGTGCCTCTTTTCCACTTCTACAAAGATGGGGTCCTGTTGGAAGCATTCCCAACCAGAGACAAAGATAGGATTCTTGCAGCTATTCTCAAGTACTCATCTCTTGAAGCTGAAGATATCTTAGGTTAACATCAAGAGATGGGGTCATGGCACCCTCGGGGACTGTTGTGCACTGCAGGGAAATTAGTAAATTTTTGTACGTGACAAAGTTCATTAAACAGCATGTTGTATACACAAAATAAAATACTTTAGTCCTGTCAGCCTAATTCACTTTGTTAGGATAGGATATTTTCTTGCAAAATATCTAGTGAAGAGTTTAATGTACACTACGATACGCCTTCTCTTTCTCCAGAGGTCATAAATAAAATTTTCATTCTGCTT

>Glyma04g04131.3   sequence type=transcript   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGATATGGGGAATGCGCGTGTCTTCTCCTCATTCGAAGTTTGCTGTGCATAGATATGGCAAAACCGCGCTTTTTGGTTTCGACGATTCCTGTGTCTGTCAGGGCTGAGTGGGTGTGCAATGTTATAAGGGTTTCTGAATTCTGATTGCTGCTCCTTCAAAATTAAAGATCATGTTCTCTCAAGAGTCAAGACTATGTTTGGCTTCCAGTTTGAAATGCTTACACAATCATGGCTGTATCTAATCTTTGTGTTTTTATATAAACATCAATGTCCATTGAAGCACAACCATTTGTAATCATTTCTCCATCTGCCAAATAGTTCACATTTTAGAGATTTTGTTTGTAGCCACTCTAGCTTGGGAAAGTCATTCTCGTTATTGGTCATTGTCTTACCTTTTTACCCCATGATGCTTGTATGTGGCATTGGTACCTTATCACTTAGCTCAGACAAGTGCCTAAGAAATGCGTGAATCAATTCAAACACAGTATTCTTTTCTATGAGGTACCAGCACCACCAGCTATCAGTTAACTTATCAAAATTTTCTCTTCCAAACTCTTGATTACGAGCCTTGAAAGATTTTGCATGCAAAAGATGCCACCGGTTATCATTCCCGGGCAGAATAGCAAGTCCTTTGTCAGTGTTAGACTAGACATACAGAAACAAGTTGAGTGTAGAATTTCCCGTGCAGTTTTCAGCTTGGTTCCTAGGCACATTCATGGCAAACTATGCTTTGGTGGTACAAAAGTTGAACCTCTAGTAAAAATCAGGCACACATTCTGCCCTAGCAGGATAAGAGTTGCCGAAGAATATCAAGAAGGTTTGTCTGATGAAGATGATGATCTCTGTCCCGTCGAATGTGTAAGAGAATTCACCACTGATGAAGAGTTCAGCAAAATTCTGGACAAGGCTAAAGAAACTGGATCTTTGGTGGTGGTAGATTTCTTTCGCACCTCTTGTGGAAGCTGCAAGTATATAGAGCAGGGTTTTGCAAAACTGTGCAAGAAATCTGGTGATCATGAAGCTCCAGTAATCTTTCTAAAGCATAATGTAATGGATGAGTATGACGAGCAATCCGAGGTTGCTGACCGACTTAGAATCAGGGTATTTCTCTTCTATTCTCTTGATTACTATTTACTGAGTATCAAATGAAACTTAATCTGTATAAAACTGACCTACCTCCCTTGGAGACAGCTAAGTATCAGCCATCAGGTTAATCTAAATGTTTGTTGTCCAACTTGTCTTCAATGTTCCGTGGTTAGTCTTCATTTGCATGATTTCTCTAGTTTACTCTAATTAACTGGTGCACATGCCATTTTCGTTTTGGTTCTGGTTTATCTTGTCATTGCTTTTTATGATTATCTCTAAAACTATCTTTACTTTCTTCACCTCTCTTTTATGGTTAATTCCATCTTCTTCCTATCCGCGATATAGATATCGGTTGTGCATCATTTTTGCTACTAGCTACTGCATGTAATCACTACACTTTCTAGTATTCATGCTTTATGATATGTTGAATATGAAGCGGAAACAAACTGATG
Coding sequences of Glyma04g04131
>Glyma04g04131.1   sequence type=CDS   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAGATGCCACCGGTTATCATTCCCGGGCAGAATAGCAAGTCCTTTGTCAGTGTTAGACTAGACATACAGAAACAAGTTGAGTGTAGAATTTCCCGTGCAGTTTTCAGCTTGGTTCCTAGGCACATTCATGGCAAACTATGCTTTGGTGGTACAAAAGTTGAACCTCTAGTAAAAATCAGGCACACATTCTGCCCTAGCAGGATAAGAGTTGCCGAAGAATATCAAGAAGGTTTGTCTGATGAAGATGATGATCTCTGTCCCGTCGAATGTGTAAGAGAATTCACCACTGATGAAGAGTTCAGCAAAATTCTGGACAAGGCTAAAGAAACTGGATCTTTGGTGGTGGTAGATTTCTTTCGCACCTCTTGTGGAAGCTGCAAGTATATAGAGCAGGGTTTTGCAAAACTGTGCAAGAAATCTGGTGATCATGAAGCTCCAGTAATCTTTCTAAAGCATAATGTAATGGATGAGTATGACGAGCAATCCGAGGTTGCTGACCGACTTAGAATCAGGGCCGTGCCTCTTTTCCACTTCTACAAAGATGGGGTCCTGTTGGAAGCATTCCCAACCAGAGACAAAGATAGGATTCTTGCAGCTATTCTCAAGTACTCATCTCTTGAAGCTGAAGATATCTTAGGTTAA

>Glyma04g04131.2   sequence type=CDS   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAGATGCCACCGGTTATCATTCCCGGGCAGAATAGCAAGTCCTTTGTCAGTGTTAGACTAGACATACAGAAACAAGTTGAGTGTAGAATTTCCCGTGCAGTTTTCAGCTTGGTTCCTAGGCACATTCATGGCAAACTATGCTTTGGTGGTACAAAAGTTGAACCTCTAGTAAAAATCAGGCACACATTCTGCCCTAGCAGGATAAGAGTTGCCGAAGAATATCAAGAAGGTTTGTCTGATGAAGATGATGATCTCTGTCCCGTCGAATGTGTAAGAGAATTCACCACTGATGAAGAGTTCAGCAAAATTCTGGACAAGGCTAAAGAAACTGGATCTTTGGTGGTGGTAGATTTCTTTCGCACCTCTTGTGGAAGCTGCAAGTATATAGAGCAGGGTTTTGCAAAACTGTGCAAGAAATCTGGTGATCATGAAGCTCCAGTAATCTTTCTAAAGCATAATGTAATGGATGAGTATGACGAGCAATCCGAGGTTGCTGACCGACTTAGAATCAGGGCCGTGCCTCTTTTCCACTTCTACAAAGATGGGGTCCTGTTGGAAGCATTCCCAACCAGAGACAAAGATAGGATTCTTGCAGCTATTCTCAAGTACTCATCTCTTGAAGCTGAAGATATCTTAGGTTAA

>Glyma04g04131.3   sequence type=CDS   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAGATGCCACCGGTTATCATTCCCGGGCAGAATAGCAAGTCCTTTGTCAGTGTTAGACTAGACATACAGAAACAAGTTGAGTGTAGAATTTCCCGTGCAGTTTTCAGCTTGGTTCCTAGGCACATTCATGGCAAACTATGCTTTGGTGGTACAAAAGTTGAACCTCTAGTAAAAATCAGGCACACATTCTGCCCTAGCAGGATAAGAGTTGCCGAAGAATATCAAGAAGGTTTGTCTGATGAAGATGATGATCTCTGTCCCGTCGAATGTGTAAGAGAATTCACCACTGATGAAGAGTTCAGCAAAATTCTGGACAAGGCTAAAGAAACTGGATCTTTGGTGGTGGTAGATTTCTTTCGCACCTCTTGTGGAAGCTGCAAGTATATAGAGCAGGGTTTTGCAAAACTGTGCAAGAAATCTGGTGATCATGAAGCTCCAGTAATCTTTCTAAAGCATAATGTAATGGATGAGTATGACGAGCAATCCGAGGTTGCTGACCGACTTAGAATCAGGGTATTTCTCTTCTATTCTCTTGATTACTATTTACTGAGTATCAAATGA
Predicted protein sequences of Glyma04g04131
>Glyma04g04131.1   sequence type=predicted peptide   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKMPPVIIPGQNSKSFVSVRLDIQKQVECRISRAVFSLVPRHIHGKLCFGGTKVEPLVKIRHTFCPSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAKETGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRLRIRAVPLFHFYKDGVLLEAFPTRDKDRILAAILKYSSLEAEDILG*

>Glyma04g04131.2   sequence type=predicted peptide   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKMPPVIIPGQNSKSFVSVRLDIQKQVECRISRAVFSLVPRHIHGKLCFGGTKVEPLVKIRHTFCPSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAKETGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRLRIRAVPLFHFYKDGVLLEAFPTRDKDRILAAILKYSSLEAEDILG*

>Glyma04g04131.3   sequence type=predicted peptide   gene model=Glyma04g04131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKMPPVIIPGQNSKSFVSVRLDIQKQVECRISRAVFSLVPRHIHGKLCFGGTKVEPLVKIRHTFCPSRIRVAEEYQEGLSDEDDDLCPVECVREFTTDEEFSKILDKAKETGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGDHEAPVIFLKHNVMDEYDEQSEVADRLRIRVFLFYSLDYYLLSIK*






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