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Report for Sequence Feature Glyma04g04120

Feature Type:gene_model
Chromosome:Gm04
Start:3021547
stop:3024835
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04120
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33400AT Annotation by Michelle Graham. TAIR10: Vacuolar import/degradation, Vid27-related protein | chr4:16078189-16080410 REVERSE LENGTH=645 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2395 KOG Protein involved in vacuole import and degradation JGI ISS
PF08553PFAM VID27 cytoplasmic protein JGI ISS
UniRef100_G7J6D3UniRef Annotation by Michelle Graham. Most informative UniRef hit: DEM2 n=1 Tax=Medicago truncatula RepID=G7J6D3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JTJ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTJ3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g04120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04120
ParalogEvidenceComments
Glyma06g04290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04120 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g038800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04120
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g04120
>Glyma04g04120.1   sequence type=CDS   gene model=Glyma04g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCAATCACAGTCGCGAAGATCTGTTGGAATCTTCCGATTCAGAGCAAGAGGAGCATGAAACCTTCGAAGACGCCACCGAAGGAAGCGCCGAACGGAAACCGTCAACGCCGTCATCCCTCGATGACGTGGAGGCCAAACTCAAAGCCCTGAAACTCAAATACTCCTCCAACTCCACCCCCGCCGTCAATAACGCCGTCAAGCTCTACGTCCACATCGGCGGCAACACCCCCAAAGCCAAATGGGTAACTTCCGAAAAACTCACCTCTTATTCATTCGTCAAAACCCACTCCGACACCGACACAGACGATGAAAACAACGACTCTGACAACGACAACGACGACTACGTCGAAACAAACGAAAAGCCTTTCTGGGTTTTAAAAGTCGGTTCGAAAATCCGATCAAAGGTGGGCCCGGAGATGGGACTGAAGAGCTTCCCCGAGCAGCGGCGCGTGGACTTCGTTGCGCGTGGCGTCTGGGCGATGAAGTTCTTCACCGACCAAGACCAGATCGACTTCATCGATTCCTTCCAGAAGTGTCTCTTCGAGAACACGCACGGCGTCGAGGCCACGGAGGCGAACAAGCTCAAAGTCTATGGCAAGGATTTCGTGGCGTGGGCGAAACCCGAAGCCGCCGATGATTCCATGTGGGAGGACGCAGAGGAAGTCTTCACCAAGAGCCCCACACCGGTTAGGTCAAACCAAGACCTAAAAGAGGAGTTCGAAGAAGCCTCCAACGGTGGAATTCAGAGCCTTGCGTTGGGGGCTTTGGACAACAGTTTCTTGGTGAGTGATAATGGGATTCAGGTTGTGAAGAATTTCGCACATGGGATTCACGGGAAGGGTGCTTTTGTGAATTTCAGTGATGGGTATCAAAATGGGGGTGGGGGTTCTACCTATTGTACCCCTAAGAAGACACTTCTGATGAGGGCTGAGACCAACATGCTTCTGATGAGCCCAATGGGTGGTGGGAAGCTTCACTCAACGGGTCTTCATCAGCTTGATATTGAGACAGGGAAGGTTGTGAGTGAGTGGATGTTTGGGAAGGATGGGACTGAAATTACGATGAGGGATATTACGAATGATAGCAAAGGGGCTCAGTTGGATCCTTCTGGGTCAACTTTTCTAGGGTTGGATGATAACAGGCTTTGTAGGTGGGATATGAGGGATCGTAATGGGATGGTTCAGAACTTGGCTGATTCAAATGCCCCTGTGTTGAATTGGGCACAAGGGCATCAGTTCTCGAGGGGGACTAACTTTCAGTGCTTTGCCACTACTGGTGATGGGTCCATTGTTGTGGGGTCTTTGGATGGGAAGATAAGGCTGTATTCGGTGAACACAATGAGGCAGGCGAAGACGGCATTTCCTGGCCTTGGATCGCCGGTTACTCATGTTGATGTAACCTTTGATGGAAAGTGGATTGTGGGTACTACTGATTCCTACTTGATTCTTATCTGTACCCTCTTTACTGACAAAAATGGAACGACGAAGACTGGGTTTGCTGGACGGATGGGGAATAGGATTGCTGCTCCCAGGTTGCTGAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCAAATAACAAGTTCCGCAATGCTCAGTTTTCGTGGGTGACAGAGAATGGGAAACAGGAGCGGCATATAGTAGCCACTGTGGGGAAGTTCAGTGTGATATGGAACTTCCAACAAGTCAAGGATGGTTCTCATGAGTGCTACCGTAACCAACAGGGTCTAAAGAGCTGCTTCTGCTACAAGATAGTCCTTAGGGATGATTCCATTGTTGAGAGCCGATTTATGCATGACAAGTTTGCAGTCACTGATTCTCCTGAGGCTCCATTGGTGATAGCCACCCCAATGAAAGTTAGCTCATTCAGCATATCTAGCAAGCGATGA
Predicted protein sequences of Glyma04g04120
>Glyma04g04120.1   sequence type=predicted peptide   gene model=Glyma04g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGANHSREDLLESSDSEQEEHETFEDATEGSAERKPSTPSSLDDVEAKLKALKLKYSSNSTPAVNNAVKLYVHIGGNTPKAKWVTSEKLTSYSFVKTHSDTDTDDENNDSDNDNDDYVETNEKPFWVLKVGSKIRSKVGPEMGLKSFPEQRRVDFVARGVWAMKFFTDQDQIDFIDSFQKCLFENTHGVEATEANKLKVYGKDFVAWAKPEAADDSMWEDAEEVFTKSPTPVRSNQDLKEEFEEASNGGIQSLALGALDNSFLVSDNGIQVVKNFAHGIHGKGAFVNFSDGYQNGGGGSTYCTPKKTLLMRAETNMLLMSPMGGGKLHSTGLHQLDIETGKVVSEWMFGKDGTEITMRDITNDSKGAQLDPSGSTFLGLDDNRLCRWDMRDRNGMVQNLADSNAPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSVNTMRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDSYLILICTLFTDKNGTTKTGFAGRMGNRIAAPRLLKLNPLDSHLAGANNKFRNAQFSWVTENGKQERHIVATVGKFSVIWNFQQVKDGSHECYRNQQGLKSCFCYKIVLRDDSIVESRFMHDKFAVTDSPEAPLVIATPMKVSSFSISSKR*






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