Glyma04g04080 - SoyBase

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Report for Sequence Feature Glyma04g04080

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3001839
stop:	3006110
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33330	AT	Annotation by Michelle Graham. TAIR10: plant glycogenin-like starch initiation protein 3 \| chr4:16059754-16063061 REVERSE LENGTH=626	SoyBase	E_val: 0	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0010417	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan biosynthetic process	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0015020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0080116	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronoxylan glucuronosyltransferase activity	SoyBase	N/A	ISS
KOG1950	KOG	Glycosyl transferase, family 8 - glycogenin	JGI		ISS
PTHR11183	Panther	GLYCOGENIN	JGI		ISS
PTHR11183:SF1	Panther	GALACTINOL SYNTHASE-RELATED	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_G7I3L3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycogenin glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7I3L3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTI9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g04080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g038500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g04080

Limit To All Plant Sequences

>Glyma04g04080.1   sequence type=CDS   gene model=Glyma04g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGTTCTAGTCTTAAAAAGATGCTGAAGACAATGCCATCTAAAGCTTCGATTACCAGAATCAATTTGGTCTTCCTTGTTGTATTTCTGGTTGTTTATGCCACTGTTCTTCCCCATCCATCTTCTGACTATTTGCAGGATGCAGGATCCATAGTGAGGTGCTCTTTGGGCGAATGTCATCACAGGGTAAGACACGAAAACTTCAAAATGAAAGCGGCATTGGATGAACCTCAAGCAAACCCACAGAGGCAAAAGAATAAGAGTGCAAAGAAGATAGAAGTACCAAGCTTTTTTAGCAAGTTAGGGGAAAGAATGAAGATTGGAATGGTAAACATGAAAGAAAACGATGTAAGTAACTGGAGCACGCATGGGGAAAGGACAAGCGTTTATTTTGAGAGGGTATCGCAGTTTTTGAACTGGACGGACTTGTTTCCCGAATGGATAGACGAGGAGGAAGAGAATGATGTGCCATCATGTCCAGAGATACCTATGCCGGAGTATGCAGAATACGGAAGCATGGACGTGATCGTGGCTAAGCTGCCATGCAGGTATCCCGAAGAAGGGTGGAAGAGGGACGTTTTCCGGTTGCAAGTTCATCTTATAGTTGCGAATCTAGCCGTGAAGAAGGGGAAGAAGGATTGGAGAGGGAAGACAAGAGTAGTTTTTTGGAGCAAGTGTAGACCAATGCTGGAGCTGTTTCCATGCGACAACTTGGTTAAGGGTGAAGGTGAATGGTGGTATTATGAACCTGAGGTGAAGAGGTTAGAACACAAGGTTTCATTGCCCATTGGGTCCTGCAAGTTGGCCTTGCCTCTCTGGGAACAAGTTGTCGACGAGGTGTACGAATTATCCAAGATTGAGAAAAGCGTTGAAAGCAGAAGGAGAATAAAACGCGAAGCGTACGCAACAGTGCTGCATTCTTCGGAAGCGTACGTTTGCGGCGCAATAACACTAGCGCAAAGCCTGCTCCAAACAGGTACCAAACGCGACCTTATCCTCCTGATAGACAAGTTCATCTCGGTTCGTAAACGCGAGGCCCTATCCGAAGCGGGTTGGAAGATCCGAATCATCACCCGGATCCGAAACCCGAAGGCCGAGAAAGGAAGCTACAACGAATACAACTACAGCAAGTTCAGGCTATGGCAGCTCACGGACTACGACAAAGTAATCTTCATCGACTCCGACATCATCGTACTCCGAAACCTCGACATCCTCTTCCACTTCCCGCAGATAACGGCCACGGGGAACGACCAATCGATATTCAACTCGGGAATAATGGTGATCGAACCTTCCAAGTGCACGTTCCGTACATTGATGCGGCACCGGGACGACGTCGTTTCGTACAACGGAGGGGACCAGGGGTTTCTGAACGAGGTGTTCGTGTGGTGGCACAGGCTGCCGCGGAGGGTGAACTTTCTGAAGAACTTCTGGGCGAACACGACGGTGGAGGCGAGGGCGAAGAACGCGTTGTTCGCGGCGGAGCCGGCGGAGGTCTACGCGATTCACTACCTGGGATGGAAGCCGTGGCACTGCTACAGGGACTATGACTGCAACTGGGACACCCCGGAGCAGAGGGTGTACGCCAGTGACGTGGCGCATCGGAGGTGGTGGAAGGTTCACGACGCGATGGAGGAGGGGTTGCAGAGGTTGTGTAGGTTGACGAAACGGCGTCGGAGTGAGTTGAACTGGGAGAGGAGGAAGGCCAGCAAGATGAGGTTACCCGATGGACATTGGAAAATCAATATCACTGATCCCAGACGATTTGCCTCTCTCTTTATGGATTAG

Predicted protein sequences of Glyma04g04080

Limit To All Plant Sequences

>Glyma04g04080.1   sequence type=predicted peptide   gene model=Glyma04g04080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGSSLKKMLKTMPSKASITRINLVFLVVFLVVYATVLPHPSSDYLQDAGSIVRCSLGECHHRVRHENFKMKAALDEPQANPQRQKNKSAKKIEVPSFFSKLGERMKIGMVNMKENDVSNWSTHGERTSVYFERVSQFLNWTDLFPEWIDEEEENDVPSCPEIPMPEYAEYGSMDVIVAKLPCRYPEEGWKRDVFRLQVHLIVANLAVKKGKKDWRGKTRVVFWSKCRPMLELFPCDNLVKGEGEWWYYEPEVKRLEHKVSLPIGSCKLALPLWEQVVDEVYELSKIEKSVESRRRIKREAYATVLHSSEAYVCGAITLAQSLLQTGTKRDLILLIDKFISVRKREALSEAGWKIRIITRIRNPKAEKGSYNEYNYSKFRLWQLTDYDKVIFIDSDIIVLRNLDILFHFPQITATGNDQSIFNSGIMVIEPSKCTFRTLMRHRDDVVSYNGGDQGFLNEVFVWWHRLPRRVNFLKNFWANTTVEARAKNALFAAEPAEVYAIHYLGWKPWHCYRDYDCNWDTPEQRVYASDVAHRRWWKVHDAMEEGLQRLCRLTKRRRSELNWERRKASKMRLPDGHWKINITDPRRFASLFMD*

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