Glyma04g04070 - SoyBase

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Report for Sequence Feature Glyma04g04070

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2997376
stop:	3000437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33350	AT	Annotation by Michelle Graham. TAIR10: Tic22-like family protein \| chr4:16064638-16066715 REVERSE LENGTH=268	SoyBase	E_val: 3.00E-126	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
PF04278	PFAM	Tic22-like family	JGI		ISS
UniRef100_B9R7D1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein translocase, putative n=1 Tax=Ricinus communis RepID=B9R7D1_RICCO	SoyBase	E_val: 3.00E-137	ISS
UniRef100_I1JTI7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTI7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04070

Paralog	Evidence	Comments
Glyma06g04250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g038400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04070

Limit To All Plant Sequences

>Glyma04g04070.2   sequence type=transcript   gene model=Glyma04g04070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTGAAGACGAAGGCTTAGAGTTAGATGGAGTCGCGCGGACACTCAAACCCGCTTCTGTCATTTTCCAGCTTCATCCATCAACACTGCGTCCGCTTAGGGTCTGACCTCGCGACTCGTTTGGATGACACGAAACGAGCCCTAGCTCAAGCTCATCATAATCTTCTATTCCCCAAACACGCCCTCGCCGCCACTTCTACTCTGGGCTCCCTGCACGTGGCTAAGTCCCTCGTCGGCACCTCTGTTTACACCGTCAGCAATTCCAACAATGAGTTCGTTCTTATCTCTGACGCTGATGGAGCCAAGTCCATTGGATTGCTTTGCTTTCGCCAAGAGGACGCCGAAGCCTTCCTCGCTCAGGTTCGATCACGGAGTAGAGAGCTTCGAAGCAAGGCTAGGGTTGTTCCAATTACTCTTGACCAGGTATACATGTTGAAGGTTGAAGGCATTGCCTTCCGATTCTTACCCGATCCTGTTCAAATAAGGAATGCTTTGGAGGTTAGCATCTTACTATATAGTTCTCGCATACAACATATCACTTTAAGCCACACCATTATTGTTCATCATTTCAGTCCAGTAGCAATGACAGTATACATGGTAGCTGCAATGTGGGAATTAGTTCTGTGGCATCAATTTAAACTAAATTATACATAAACATGTAGCATGTATGTTGGTTGATCCGCTGAGCTGCTAGATTCTGTTTAATTTAGTATCCATTTCACTCGTCAGCTTAAACCAGCCAACAAGGGAGGTTTCGATGGAGTTCCTGTTTTTCAGGTATGTTTTCTTATTTGCTTGTGAACTTTAGATGGTCTGTGGGTGGGAGTTACAAAATGTTATGAGCTCATTTTTTGTTTTATACATTTATCAGGTATAAAAAAGGAACTATTACTATCAGAACAAACTTAACTTCTG

Coding sequences of Glyma04g04070

Limit To All Plant Sequences

>Glyma04g04070.1   sequence type=CDS   gene model=Glyma04g04070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCGCGCGGACACTCAAACCCGCTTCTGTCATTTTCCAGCTTCATCCATCAACACTGCGTCCGCTTAGGGTCTGACCTCGCGACTCGTTTGGATGACACGAAACGAGCCCTAGCTCAAGCTCATCATAATCTTCTATTCCCCAAACACGCCCTCGCCGCCACTTCTACTCTGGGCTCCCTGCACGTGGCTAAGTCCCTCGTCGGCACCTCTGTTTACACCGTCAGCAATTCCAACAATGAGTTCGTTCTTATCTCTGACGCTGATGGAGCCAAGTCCATTGGATTGCTTTGCTTTCGCCAAGAGGACGCCGAAGCCTTCCTCGCTCAGGTTCGATCACGGAGTAGAGAGCTTCGAAGCAAGGCTAGGGTTGTTCCAATTACTCTTGACCAGGTATACATGTTGAAGGTTGAAGGCATTGCCTTCCGATTCTTACCCGATCCTGTTCAAATAAGGAATGCTTTGGAGCTTAAACCAGCCAACAAGGGAGGTTTCGATGGAGTTCCTGTTTTTCAGTCAGAGCTTTTGGTTGTGAAGAAGAAGAAGAAGCGTTACTGCCCTGTGTATTTCTCTAAGGAGGATATTGAGCAGGAACTGTCCAAAGTTTCCAGGGCATCAAGAGGACCTGGTGTTTCTCAACATATAGCAGTTGGTAGCTTGGAAGATGTACTGAGAAAAATGGAGATGAGTGAAAGGAATTCAGGATGGGAGGATTTGATTTTTATTCCACCAGGAAAAAGTCGCTCTCAACACATACAAGAACTTAATGAATGA

>Glyma04g04070.2   sequence type=CDS   gene model=Glyma04g04070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCGCGCGGACACTCAAACCCGCTTCTGTCATTTTCCAGCTTCATCCATCAACACTGCGTCCGCTTAGGGTCTGACCTCGCGACTCGTTTGGATGACACGAAACGAGCCCTAGCTCAAGCTCATCATAATCTTCTATTCCCCAAACACGCCCTCGCCGCCACTTCTACTCTGGGCTCCCTGCACGTGGCTAAGTCCCTCGTCGGCACCTCTGTTTACACCGTCAGCAATTCCAACAATGAGTTCGTTCTTATCTCTGACGCTGATGGAGCCAAGTCCATTGGATTGCTTTGCTTTCGCCAAGAGGACGCCGAAGCCTTCCTCGCTCAGGTTCGATCACGGAGTAGAGAGCTTCGAAGCAAGGCTAGGGTTGTTCCAATTACTCTTGACCAGGTATACATGTTGAAGGTTGAAGGCATTGCCTTCCGATTCTTACCCGATCCTGTTCAAATAAGGAATGCTTTGGAGGTTAGCATCTTACTATATAGTTCTCGCATACAACATATCACTTTAAGCCACACCATTATTGTTCATCATTTCAGTCCAGTAGCAATGACAGTATACATGGTAGCTGCAATGTGGGAATTAGTTCTGTGGCATCAATTTAAACTAAATTATACATAA

Predicted protein sequences of Glyma04g04070

Limit To All Plant Sequences

>Glyma04g04070.1   sequence type=predicted peptide   gene model=Glyma04g04070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRGHSNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQAHHNLLFPKHALAATSTLGSLHVAKSLVGTSVYTVSNSNNEFVLISDADGAKSIGLLCFRQEDAEAFLAQVRSRSRELRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALELKPANKGGFDGVPVFQSELLVVKKKKKRYCPVYFSKEDIEQELSKVSRASRGPGVSQHIAVGSLEDVLRKMEMSERNSGWEDLIFIPPGKSRSQHIQELNE*

>Glyma04g04070.2   sequence type=predicted peptide   gene model=Glyma04g04070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRGHSNPLLSFSSFIHQHCVRLGSDLATRLDDTKRALAQAHHNLLFPKHALAATSTLGSLHVAKSLVGTSVYTVSNSNNEFVLISDADGAKSIGLLCFRQEDAEAFLAQVRSRSRELRSKARVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALEVSILLYSSRIQHITLSHTIIVHHFSPVAMTVYMVAAMWELVLWHQFKLNYT*

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