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Report for Sequence Feature Glyma04g04041

Feature Type:gene_model
Chromosome:Gm04
Start:2964108
stop:2969152
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g04041
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47380AT Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr1:17373004-17375305 REVERSE LENGTH=428 SoyBaseE_val: 0ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
KOG0698 KOG Serine/threonine protein phosphatase JGI ISS
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI ISS
PTHR13832:SF25Panther gb def: serine-threonine phosophatase 2c [toxoplasma gondii] JGI ISS
PF00481PFAM Protein phosphatase 2C JGI ISS
UniRef100_G7I3N5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C-like protein n=1 Tax=Medicago truncatula RepID=G7I3N5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233939AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233939A related cluster n=1 Tax=unknown RepID=UPI000233939A SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g04041
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g04041 not represented in the dataset
Glyma04g04041 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04041
ParalogEvidenceComments
Glyma06g04210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04041 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g038000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g04041
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g04041
>Glyma04g04041.2   sequence type=transcript   gene model=Glyma04g04041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGCGAATGAAACGATGTCGTTTTGCCATGTCATGTCATTCACCGTCTTCGGGGAAAAGAAACATTTCATTCATTCATTTTATGCTTTATTGTCTTGTGTTGTATGCATCAACCAACCAACAAACCGATGCAAGTTCTGCAGAACGCCGGGATCTTCGTTTTCGACCGCTCCATCACGCCCTATCCCTTGATGCTCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCTCAGTATAATCCTCAAAACCTCCCATTCTTCTAATTACCCACATTACATCCTCATTATTATAATAAATGCCCAATTGGCGTAATGAGAAACGTGTGTTGTGTCGTAATTAGTTAACGTGTGTGATTGTGTCGTGATTTTTGGATTCTGTTGTAACTAACGAACGACACAGTCACACCGAGGATTAAAGCAGAAGGCGTTGGTTGGTGTGTCGTATCGGAGAAATTGAGGTTGATCGGCGCCAACAATGTCTGCTCAGAGTGAACACCAATCGGTTTCTCTTTCGGTGCTGCTGAAGCGAGAGTTGGCGAATGAGAAAAATGAGAAGCCGGAGGTTGTTATTTTGCACGGCCAAGCTAGCGAGAATAAGAAAGGAGAGGATTTCACGCTATTGAAGACGGAATGCCAAAGGGTGCTGGGAGATGGGGTTTCTACCTATTCTGTTTTTGGGGTATGTTAGTGTTATGTTTCTTTCTCACACCATCACATCCTCTTTTTTTTTTTTTTTTTTTTAATTTGGATTTAATGGATTCTAAATTTGTAACTCACCAGTGGATTTTAATGTGATTGTGATGCATCAGAAGTCAATGATCGTGTGATGTGTTATTTACGTATGATACTGACATGGCATTATGATGGGGAAAAGTGAACAAGCTATGTCACTATTCGATGGACACAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTAAACAATGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAGGATTTTCAAGAGAAAGCACAAACATCGGGAACAACTGTAACCTTTATGATTACAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTGGAGCCTTCTGAAGGTGGAATTTATTACTTGTCAGCAGACCATAGACTAGAGAGCAATGAAGAGGAGAGGGTACGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGAGGAGGCACCGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGATTATTCTCAGCAGTGATGGTGTCTGGGATGCTCTAAGTGCAGAAATGGCCCTTGATTGCTGTCGTGGCATGTCACCTGAGGCTGCAGCAACCCATATTGTGAAAGAATCTGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGACATATTACCCCAGGAGAAGCCACCTACTTCTGTGCTAACACAAAAGAAACCGGTAAAAGGAATGCTTAAGTCCATTTTTCGCAAAAAGTCCTCTGAATCATCATCTTTTATTGACAAAGAATACCTGGAGTCAGATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGATTAGAAACAAAATATCCACTTTGCAACATGTTCAAGCCGTTTACCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGAGAAGGTATTTCCATACACGAGGGTGTGCCTAACCCAGGAAGATTGCGTCCCTCATATGGACCTTTCCTTTGCCCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAGCGAACATCAGATAGACTTAGCAGCGGGAGTGACTAATGAATTATCTTGTACATTTGCATTTTTGAGAATGACAAAGATTGTTCATATAACGGGAAGGTCAAACTTCCACGCAACAGTGACCCCCCTACTAGATTACCACGGAGGTTTCTCAGAATACGGATCTATTTTGGAAATCCACATGATAATCAATATGGAGTTTTCTGTGTTGTTCAGTCAAGACATTAACCAACAATTGAAGCTTGTTAGAAGAATTCTGACTCAGAAGAGAGGAATATGAATCACCCAAGTGTTGTGTTAAAAGTGGGAATGCACAACAGGACATCGAGGTGATTCATTCTGTTATTCCTTTTTCCTCCCTGGATCCGTTCATAATCATTTGTATATAGGTCTTTGGAATCACGAAATGTACCTTTAATGGAAGTGATCTTTGTTGTTGTATTGTTCTACAGGGAGGGTTTTCAATTTTTTTGGGGTCCATACAAGGGAGTTTATTTAGATGTCACATAGATCAATTCCACTAAGAATAGACGTGCGCTTAAGGCCTCTGAACGATTTCTTTTATTCTTGTAGCATTCAGTTTTGATAATTTCTTTTACCATTCCAATATTAACTTTTATGTAATCGAAATGTTCGG
Coding sequences of Glyma04g04041
>Glyma04g04041.1   sequence type=CDS   gene model=Glyma04g04041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCTCAGAGTGAACACCAATCGGTTTCTCTTTCGGTGCTGCTGAAGCGAGAGTTGGCGAATGAGAAAAATGAGAAGCCGGAGGTTGTTATTTTGCACGGCCAAGCTAGCGAGAATAAGAAAGGAGAGGATTTCACGCTATTGAAGACGGAATGCCAAAGGGTGCTGGGAGATGGGGTTTCTACCTATTCTGTTTTTGGGCTATTCGATGGACACAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTAAACAATGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAGGATTTTCAAGAGAAAGCACAAACATCGGGAACAACTGTAACCTTTATGATTACAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTGGAGCCTTCTGAAGGTGGAATTTATTACTTGTCAGCAGACCATAGACTAGAGAGCAATGAAGAGGAGAGGGTACGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGAGGAGGCACCGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGATTATTCTCAGCAGTGATGGTGTCTGGGATGCTCTAAGTGCAGAAATGGCCCTTGATTGCTGTCGTGGCATGTCACCTGAGGCTGCAGCAACCCATATTGTGAAAGAATCTGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGACATATTACCCCAGGAGAAGCCACCTACTTCTGTGCTAACACAAAAGAAACCGGTAAAAGGAATGCTTAAGTCCATTTTTCGCAAAAAGTCCTCTGAATCATCATCTTTTATTGACAAAGAATACCTGGAGTCAGATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGATTAGAAACAAAATATCCACTTTGCAACATGTTCAAGCCGTTTACCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGAGAAGGTATTTCCATACACGAGGGTGTGCCTAACCCAGGAAGATTGCGTCCCTCATATGGACCTTTCCTTTGCCCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAGCGAACATCAGATAGACTTAGCAGCGGGAGTGACTAA

>Glyma04g04041.2   sequence type=CDS   gene model=Glyma04g04041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGGAAAAGTGAACAAGCTATGTCACTATTCGATGGACACAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTAAACAATGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAGGATTTTCAAGAGAAAGCACAAACATCGGGAACAACTGTAACCTTTATGATTACAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTGGAGCCTTCTGAAGGTGGAATTTATTACTTGTCAGCAGACCATAGACTAGAGAGCAATGAAGAGGAGAGGGTACGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGAGGAGGCACCGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGATTATTCTCAGCAGTGATGGTGTCTGGGATGCTCTAAGTGCAGAAATGGCCCTTGATTGCTGTCGTGGCATGTCACCTGAGGCTGCAGCAACCCATATTGTGAAAGAATCTGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGACATATTACCCCAGGAGAAGCCACCTACTTCTGTGCTAACACAAAAGAAACCGGTAAAAGGAATGCTTAAGTCCATTTTTCGCAAAAAGTCCTCTGAATCATCATCTTTTATTGACAAAGAATACCTGGAGTCAGATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGATTAGAAACAAAATATCCACTTTGCAACATGTTCAAGCCGTTTACCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGAGAAGGTATTTCCATACACGAGGGTGTGCCTAACCCAGGAAGATTGCGTCCCTCATATGGACCTTTCCTTTGCCCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAGCGAACATCAGATAGACTTAGCAGCGGGAGTGACTAA
Predicted protein sequences of Glyma04g04041
>Glyma04g04041.1   sequence type=predicted peptide   gene model=Glyma04g04041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAQSEHQSVSLSVLLKRELANEKNEKPEVVILHGQASENKKGEDFTLLKTECQRVLGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMITEGWVVTVASVGDSRCILEPSEGGIYYLSADHRLESNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTAGGRIILSSDGVWDALSAEMALDCCRGMSPEAAATHIVKESVQAKGLRDDTTCIVIDILPQEKPPTSVLTQKKPVKGMLKSIFRKKSSESSSFIDKEYLESDVVQELYEEGSAMLSERLETKYPLCNMFKPFTCAVCQVEIKPGEGISIHEGVPNPGRLRPSYGPFLCPSCQEKKEAMEGKRTSDRLSSGSD*

>Glyma04g04041.2   sequence type=predicted peptide   gene model=Glyma04g04041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGKSEQAMSLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMITEGWVVTVASVGDSRCILEPSEGGIYYLSADHRLESNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTAGGRIILSSDGVWDALSAEMALDCCRGMSPEAAATHIVKESVQAKGLRDDTTCIVIDILPQEKPPTSVLTQKKPVKGMLKSIFRKKSSESSSFIDKEYLESDVVQELYEEGSAMLSERLETKYPLCNMFKPFTCAVCQVEIKPGEGISIHEGVPNPGRLRPSYGPFLCPSCQEKKEAMEGKRTSDRLSSGSD*






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