Glyma04g04030 - SoyBase

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Report for Sequence Feature Glyma04g04030

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2950261
stop:	2961277
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42700	AT	Annotation by Michelle Graham. TAIR10: AP2/B3-like transcriptional factor family protein \| chr5:17122171-17124177 FORWARD LENGTH=211	SoyBase	E_val: 1.00E-74	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF02362	PFAM	B3 DNA binding domain	JGI		ISS
UniRef100_G7J6B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: B3 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J6B9_MEDTR	SoyBase	E_val: 1.00E-103	ISS
UniRef100_I1JTI3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTI3_SOYBN	SoyBase	E_val: 3.00E-167	ISS

Expression Patterns of Glyma04g04030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04030

Paralog	Evidence	Comments
Glyma06g04200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g037800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04030

Limit To All Plant Sequences

>Glyma04g04030.2   sequence type=transcript   gene model=Glyma04g04030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAAAACCTAGTGCGGAAATGACGCAAGACATTGGGAAGTGGGAATGCAACGGTCGATTGAGGAGACACGACACTGCTGCAATTGCAATGCCATTTTCTGTACGAATTTATAAGATCCAAACAATGCATTAACATAACATTATTCTGGGCGTTGCCATTGTTCTCTTTTCCAGAAAGAAAAAATGGTGGCAGCAATAGCATACGAGGAGAGTCGTCGCAAGAGAGTGGAAGAGAACAGAAAGAGGATGGAAGCCCTCAATCTCCCCCTCCTCTCTCAAGCTCTTCACAAATCCCCTTCTCCCAAATCCTCACCGCTGAAGCAGGTCAAGAATCGCACCATTCAGAAAGAGTTGGTTGTTGTCCGAAGGTCTAGCCGTGTGGCAAATTTGCCCACTCCTGTTTACAAAGAAGTGGTTGTTGATCGCGTGACAATACCTAGAAGAACCCTTGGTAGACCTTACAATAGACACAGGGATTATGCCAATAGGGTATATGCTTCTGATGAAGCCAGAGAGGAAGCATTGGAGAAAGCAGAAACCTTAATGTCGGGTCTAGAATCTGAACATCCAGCCTTCATAAAGTCAATGCTACAATCCCACATCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAAGAGCAATCTTCCAAAAGGGGACGAAGTGATGACTTTGATTGATGAGGATGGGAATGAGTATCCAACAATATATTTGGCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGGTCATGACCTAGCTGACGGAGATGCTGTAATTTTTCAATTAATTAAGCACACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTCCACCAGAGGATAAGTGAATTGCAGTTGGAGATTGGATCCAGGAAAGTTAATCTAGGTTCTCTTATGTGGTGGAAGTGGAAGGTCTTGGGATCAGTTTTTGGTCAAGTTTTTAAAGACTTGTAGTTTGGCT

Coding sequences of Glyma04g04030

Limit To All Plant Sequences

>Glyma04g04030.1   sequence type=CDS   gene model=Glyma04g04030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAGCAATAGCATACGAGGAGAGTCGTCGCAAGAGAGTGGAAGAGAACAGAAAGAGGATGGAAGCCCTCAATCTCCCCCTCCTCTCTCAAGCTCTTCACAAATCCCCTTCTCCCAAATCCTCACCGCTGAAGCAGGTCAAGAATCGCACCATTCAGAAAGAGTTGGTTGTTGTCCGAAGGTCTAGCCGTGTGGCAAATTTGCCCACTCCTGTTTACAAAGAAGTGGTTGTTGATCGCGTGACAATACCTAGAAGAACCCTTGGTAGACCTTACAATAGACACAGGGATTATGCCAATAGGGTATATGCTTCTGATGAAGCCAGAGAGGAAGCATTGGAGAAAGCAGAAACCTTAATGTCGGGTCTAGAATCTGAACATCCAGCCTTCATAAAGTCAATGCTACAATCCCACATCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAAGAGCAATCTTCCAAAAGGGGACGAAGTGATGACTTTGATTGATGAGGATGGGAATGAGTATCCAACAATATATTTGGCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGGTCATGACCTAGCTGACGGAGATGCTGTAATTTTTCAATTAATTAAGCACACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTCCACCAGAGGATAAGTGA

>Glyma04g04030.2   sequence type=CDS   gene model=Glyma04g04030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAGCAATAGCATACGAGGAGAGTCGTCGCAAGAGAGTGGAAGAGAACAGAAAGAGGATGGAAGCCCTCAATCTCCCCCTCCTCTCTCAAGCTCTTCACAAATCCCCTTCTCCCAAATCCTCACCGCTGAAGCAGGTCAAGAATCGCACCATTCAGAAAGAGTTGGTTGTTGTCCGAAGGTCTAGCCGTGTGGCAAATTTGCCCACTCCTGTTTACAAAGAAGTGGTTGTTGATCGCGTGACAATACCTAGAAGAACCCTTGGTAGACCTTACAATAGACACAGGGATTATGCCAATAGGGTATATGCTTCTGATGAAGCCAGAGAGGAAGCATTGGAGAAAGCAGAAACCTTAATGTCGGGTCTAGAATCTGAACATCCAGCCTTCATAAAGTCAATGCTACAATCCCACATCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAAGAGCAATCTTCCAAAAGGGGACGAAGTGATGACTTTGATTGATGAGGATGGGAATGAGTATCCAACAATATATTTGGCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGGTCATGACCTAGCTGACGGAGATGCTGTAATTTTTCAATTAATTAAGCACACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTCCACCAGAGGATAAGTGA

Predicted protein sequences of Glyma04g04030

Limit To All Plant Sequences

>Glyma04g04030.1   sequence type=predicted peptide   gene model=Glyma04g04030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAIAYEESRRKRVEENRKRMEALNLPLLSQALHKSPSPKSSPLKQVKNRTIQKELVVVRRSSRVANLPTPVYKEVVVDRVTIPRRTLGRPYNRHRDYANRVYASDEAREEALEKAETLMSGLESEHPAFIKSMLQSHISGGFWLGLPVHFCKSNLPKGDEVMTLIDEDGNEYPTIYLARKTGLSGGWKGFAVGHDLADGDAVIFQLIKHTAFKVYIIRANSPPEDK*

>Glyma04g04030.2   sequence type=predicted peptide   gene model=Glyma04g04030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAIAYEESRRKRVEENRKRMEALNLPLLSQALHKSPSPKSSPLKQVKNRTIQKELVVVRRSSRVANLPTPVYKEVVVDRVTIPRRTLGRPYNRHRDYANRVYASDEAREEALEKAETLMSGLESEHPAFIKSMLQSHISGGFWLGLPVHFCKSNLPKGDEVMTLIDEDGNEYPTIYLARKTGLSGGWKGFAVGHDLADGDAVIFQLIKHTAFKVYIIRANSPPEDK*

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