Glyma04g04020 - SoyBase

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Report for Sequence Feature Glyma04g04020

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2942114
stop:	2947430
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g04020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44250	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF829, transmembrane 53 \| chr5:17823876-17825620 REVERSE LENGTH=403	SoyBase	E_val: 8.00E-153	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2521	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12265	Panther	UNCHARACTERIZED	JGI		ISS
PF05705	PFAM	Eukaryotic protein of unknown function (DUF829)	JGI		ISS
UniRef100_Q2R179	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R179_ORYSJ	SoyBase	E_val: 6.00E-129	ISS
UniRef100_UPI0002339399	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339399 related cluster n=1 Tax=unknown RepID=UPI0002339399	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g04020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g04020

Paralog	Evidence	Comments
Glyma06g04186	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g04020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g037700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g04020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g04020

Limit To All Plant Sequences

>Glyma04g04020.2   sequence type=transcript   gene model=Glyma04g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATTCCCGTATCCCGTCGCCACGAGTTGTGGACAACACAATATAAAAACTAAAAAGTGGGTACACCAATAGAAATGCCCTTTTGTGTTGCGATCTTCGAAGAAGCGTGAGAGCTCAAACACACAACAACACCACCTGCCTCTGGCTGAGACAACCTTAACTCCGGTCGCTCTCCGGTTCTTTCCAAGTTCCATCCACGGGTTTTGTGTTTTCCGCACGAGTGACGGAAACAAAGAGAAAGCTCAAATTGCACGTGCCTATCTCTCTTCTCAAGTAAACTTTCTCCATTTCTTCTTCGATCTTGTGCAAATTTTGGAGTTTTGTTTCCCCTTGTTGGTTCTCTGGAAATTAAGTGTTCGGAGCTCTGTGGTTTTTGTTGTGGCTGGATTAAGAAGAAGAAGAATGTGGGGATTTGGTGGTAGATATTACTGGGGAAGAAAAGTGGCTTGTGAGAGAGCTGATGGGATAGTTGTGGTGTTCGCGTGGATGTCAAGCGAGGAGAAGCACTTAATGAAATACGTGGAGCTCTATTCCTCTATCGGATGGAATTCACTCGTTTGCCATTCTCAATTTCTCAATATGTTCTTCCCAGACAAAGCCACAATTCTTGCTGTTGATATTCTTAACGAACTTGTTGAGGTGCTGAAAATCAGGCCTTGCCCCATTGTTTTTGCATCCTTTTCAGGCGGTGCAAAAGCTTGTATGCAGAAGGTTCTTCAGATAATTAGTGGCAGCTCTGAAGCTCATAATATGGATGACTACCAGCTAGTTAGAGACTGTATTTCTGGCTATATTTATGATTCCAGCCCAGTTGATTTTACCAGTGATTTGGGTGTTCGATTTCTTCTACAACCAAGTGTTTTAAAAGTGTCCCATCCACCAAGATTTGCTTCATGGGTTGCAAATGGCATAGCCTCTGGTCTTGATTCTCTTTTCCTCAGTAGATTTGAATCACAGCGTGCAGAGTATTGGCAGACACTTTACTCTACCATTAATATGCAGGTCCCGTATCTCATTTTATGTTCAGAAAATGATGATCTTGCTCCTTTTCAAGTTATTTCAAATTTTTTCCAAAGACTAAAAGACCTTGGTGGAGATGTCAAGTTGTTAAAATGGAGTGCTTCTCCTCATGTAGGTCATTTTTGGCATCATCCAATTGATTACAAGGCTGCTATCACTGAGATCCTTGGCAAGGCTGTTGCAATTTATCATTCCAAAAATAGTCGAATTGAAGATGAGAAACTGGGTATGGAAGGAACAAAAGATGAGATCACAGATCCGTTCTCTGGATTGAGGAAAGCGACAATGTCCTCAACTAGTTTTCAGGGTTTTGCTCTTGCTCCAAGTGATAATTTGTCTTCTAGTTCAACGGAATATTACGTGGGTAAGGGTGTTGGCACCATAGCAGATGAACGCAAAGGAGGGTTTATTCATCTCCCGAGCCGTCCGAGCATCAATGCAAATGGGGTTCTTGGCCAAATATTGTTTGATGTTTGTGTACCCAAGAATGTTGAGGATTGGGATATCAGGTCAAATTCCAAGAATGCACCATTAGCAGGTACAAGGAAGCATGTTCCATTTAATCCTATAAAATGCATTCGGCGTTCAAGGTTGTAAGATTGTTGACTGACAAAAGCCTCAGGAAAATTATGCTTGGAAGGTTGGTGTTTTCTTCAAGGTTCAAAATTTTTAAGGAGATCCAATGGGCACGAGAGATGTGTAGTAGTATTATTACCTTAAGTAAGAGGCAAACGGACTAATAACTTACCACCTAAGCTGTTCTTTTAGCACTTTGGACTTAGTAATGTGATTGAGAAGCTTGCCTTTTTCTTAATGTAAATTGTACATATACTTCAATGGAGAAAAGAAAAATGTTTTAACTAAGATCACTATGACAAGAATATAGGTGGAATTATAATTGTAGCCCCACCCAAATTCTGTTCGTAAAGAAAGTAATCCTAATCACTGCTTCTGAGCTCAATATCAACCTCGGTGTTCAGAATCAAGGGTTGTTTGACGTGTTGAATAAATGGAATGCTCCTCGATCTTGTTCAGCAGTTAGTACAACTTATCAATAGCACATGTGAATAGTACTGTTCGTTATATATTTTTCGTATCTCTTCTATAACAATGCAACCGACTCAGCTACTAGTACTTGAGAATATATAATGAGAGT

Coding sequences of Glyma04g04020

Limit To All Plant Sequences

>Glyma04g04020.1   sequence type=CDS   gene model=Glyma04g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGATTTGGTGGTAGATATTACTGGGGAAGAAAAGTGGCTTGTGAGAGAGCTGATGGGATAGTTGTGGTGTTCGCGTGGATGTCAAGCGAGGAGAAGCACTTAATGAAATACGTGGAGCTCTATTCCTCTATCGGATGGAATTCACTCGTTTGCCATTCTCAATTTCTCAATATGTTCTTCCCAGACAAAGCCACAATTCTTGCTGTTGATATTCTTAACGAACTTGTGCTGAAAATCAGGCCTTGCCCCATTGTTTTTGCATCCTTTTCAGGCGGTGCAAAAGCTTGTATGCAGAAGGTTCTTCAGATAATTAGTGGCAGCTCTGAAGCTCATAATATGGATGACTACCAGCTAGTTAGAGACTGTATTTCTGGCTATATTTATGATTCCAGCCCAGTTGATTTTACCAGTGATTTGGGTGTTCGATTTCTTCTACAACCAAGTGTTTTAAAAGTGTCCCATCCACCAAGATTTGCTTCATGGGTTGCAAATGGCATAGCCTCTGGTCTTGATTCTCTTTTCCTCAGTAGATTTGAATCACAGCGTGCAGAGTATTGGCAGACACTTTACTCTACCATTAATATGCAGGTCCCGTATCTCATTTTATGTTCAGAAAATGATGATCTTGCTCCTTTTCAAGTTATTTCAAATTTTTTCCAAAGACTAAAAGACCTTGGTGGAGATGTCAAGTTGTTAAAATGGAGTGCTTCTCCTCATGTAGGTCATTTTTGGCATCATCCAATTGATTACAAGGCTGCTATCACTGAGATCCTTGGCAAGGCTGTTGCAATTTATCATTCCAAAAATAGTCGAATTGAAGATGAGAAACTGGGTATGGAAGGAACAAAAGATGAGATCACAGATCCGTTCTCTGGATTGAGGAAAGCGACAATGTCCTCAACTAGTTTTCAGGGTTTTGCTCTTGCTCCAAGTGATAATTTGTCTTCTAGTTCAACGGAATATTACGTGGGTAAGGGTGTTGGCACCATAGCAGATGAACGCAAAGGAGGGTTTATTCATCTCCCGAGCCGTCCGAGCATCAATGCAAATGGGGTTCTTGGCCAAATATTGTTTGATGTTTGTGTACCCAAGAATGTTGAGGATTGGGATATCAGGTCAAATTCCAAGAATGCACCATTAGCAGGTACAAGGAAGCATGTTCCATTTAATCCTATAAAATGCATTCGGCGTTCAAGGTTGTAA

>Glyma04g04020.2   sequence type=CDS   gene model=Glyma04g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGATTTGGTGGTAGATATTACTGGGGAAGAAAAGTGGCTTGTGAGAGAGCTGATGGGATAGTTGTGGTGTTCGCGTGGATGTCAAGCGAGGAGAAGCACTTAATGAAATACGTGGAGCTCTATTCCTCTATCGGATGGAATTCACTCGTTTGCCATTCTCAATTTCTCAATATGTTCTTCCCAGACAAAGCCACAATTCTTGCTGTTGATATTCTTAACGAACTTGTTGAGGTGCTGAAAATCAGGCCTTGCCCCATTGTTTTTGCATCCTTTTCAGGCGGTGCAAAAGCTTGTATGCAGAAGGTTCTTCAGATAATTAGTGGCAGCTCTGAAGCTCATAATATGGATGACTACCAGCTAGTTAGAGACTGTATTTCTGGCTATATTTATGATTCCAGCCCAGTTGATTTTACCAGTGATTTGGGTGTTCGATTTCTTCTACAACCAAGTGTTTTAAAAGTGTCCCATCCACCAAGATTTGCTTCATGGGTTGCAAATGGCATAGCCTCTGGTCTTGATTCTCTTTTCCTCAGTAGATTTGAATCACAGCGTGCAGAGTATTGGCAGACACTTTACTCTACCATTAATATGCAGGTCCCGTATCTCATTTTATGTTCAGAAAATGATGATCTTGCTCCTTTTCAAGTTATTTCAAATTTTTTCCAAAGACTAAAAGACCTTGGTGGAGATGTCAAGTTGTTAAAATGGAGTGCTTCTCCTCATGTAGGTCATTTTTGGCATCATCCAATTGATTACAAGGCTGCTATCACTGAGATCCTTGGCAAGGCTGTTGCAATTTATCATTCCAAAAATAGTCGAATTGAAGATGAGAAACTGGGTATGGAAGGAACAAAAGATGAGATCACAGATCCGTTCTCTGGATTGAGGAAAGCGACAATGTCCTCAACTAGTTTTCAGGGTTTTGCTCTTGCTCCAAGTGATAATTTGTCTTCTAGTTCAACGGAATATTACGTGGGTAAGGGTGTTGGCACCATAGCAGATGAACGCAAAGGAGGGTTTATTCATCTCCCGAGCCGTCCGAGCATCAATGCAAATGGGGTTCTTGGCCAAATATTGTTTGATGTTTGTGTACCCAAGAATGTTGAGGATTGGGATATCAGGTCAAATTCCAAGAATGCACCATTAGCAGGTACAAGGAAGCATGTTCCATTTAATCCTATAAAATGCATTCGGCGTTCAAGGTTGTAA

Predicted protein sequences of Glyma04g04020

Limit To All Plant Sequences

>Glyma04g04020.1   sequence type=predicted peptide   gene model=Glyma04g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWGFGGRYYWGRKVACERADGIVVVFAWMSSEEKHLMKYVELYSSIGWNSLVCHSQFLNMFFPDKATILAVDILNELVLKIRPCPIVFASFSGGAKACMQKVLQIISGSSEAHNMDDYQLVRDCISGYIYDSSPVDFTSDLGVRFLLQPSVLKVSHPPRFASWVANGIASGLDSLFLSRFESQRAEYWQTLYSTINMQVPYLILCSENDDLAPFQVISNFFQRLKDLGGDVKLLKWSASPHVGHFWHHPIDYKAAITEILGKAVAIYHSKNSRIEDEKLGMEGTKDEITDPFSGLRKATMSSTSFQGFALAPSDNLSSSSTEYYVGKGVGTIADERKGGFIHLPSRPSINANGVLGQILFDVCVPKNVEDWDIRSNSKNAPLAGTRKHVPFNPIKCIRRSRL*

>Glyma04g04020.2   sequence type=predicted peptide   gene model=Glyma04g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWGFGGRYYWGRKVACERADGIVVVFAWMSSEEKHLMKYVELYSSIGWNSLVCHSQFLNMFFPDKATILAVDILNELVEVLKIRPCPIVFASFSGGAKACMQKVLQIISGSSEAHNMDDYQLVRDCISGYIYDSSPVDFTSDLGVRFLLQPSVLKVSHPPRFASWVANGIASGLDSLFLSRFESQRAEYWQTLYSTINMQVPYLILCSENDDLAPFQVISNFFQRLKDLGGDVKLLKWSASPHVGHFWHHPIDYKAAITEILGKAVAIYHSKNSRIEDEKLGMEGTKDEITDPFSGLRKATMSSTSFQGFALAPSDNLSSSSTEYYVGKGVGTIADERKGGFIHLPSRPSINANGVLGQILFDVCVPKNVEDWDIRSNSKNAPLAGTRKHVPFNPIKCIRRSRL*

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