Glyma04g03980 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03980

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2917543
stop:	2918490
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47480	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:17417623-17419296 FORWARD LENGTH=314	SoyBase	E_val: 3.00E-120	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_G7J6B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1 n=1 Tax=Medicago truncatula RepID=G7J6B0_MEDTR	SoyBase	E_val: 4.00E-150	ISS
UniRef100_I1JTH9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTH9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03980

Paralog	Evidence	Comments
Glyma06g04140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g037400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03980

Limit To All Plant Sequences

>Glyma04g03980.1   sequence type=CDS   gene model=Glyma04g03980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCTCCAAGCAACTTGGAAATCTCGGTGGATGTTCCTCCTTACCTTCGAGTGCACAAAGACGGCACCCAAGTTGTTCCCGCGGGCCTCGATTCCGACACCGATGTTGTTTCCAAAGACATCCTTATCGTCCCCGAAACCGGCGTCACAGCCAGGCTCTACCGTCCAAATTCCACCCCCAAAACCGCCAAGCTCCCTTTACTTCTTTACTTCCACGGCGGCGCCTTCTGCATCTCCTCCGCCTCCGACCCTCTTTACCACACCTCCCTCAACAACCTCGTCGCCGAGGCCAACGTTGTCGCTCTCTCCGTCAATTACAGGCTCGCACCAGAGCACCCTCTTCCCACCGCGTACCAAGATTCCTGGTCCGCGATACAATGGGCCGCTTCTAATGCTAAACACCATCAAGAAGATTGGATCAGGGACAACGTTGATTTTGACAGAGTCTTCCTAGCAGGGGACAGCGCAGGTGCCAACATGGGACACTACACGGCCTTGAAGTTGAATAATAATGTTCCAACAAATGATGATTTCGATTTCAAGGTTGCGGGTCTCATCATGGTGAACCCTTATTTCTGGGGAAAGGAAGCAATTGGAGTGGAGATTACGGATCCGGAGAGGAAGAAGATGGTGGATAAGTGGTGGAGTTTTGTTTGTCCTTCGGATAAAGGGAACGATGACCCTTTGATTAACCCTTTTGTGGAGGAGGCTCCGGGTATTGAAGGGGTTGCTGGCGATAGGGTTCTTGTTACTGTTGCGGAGAAAGACATACTGAGGGAAAGGGGGGAGCTTTATCACAAAAGGTTGAGCAACTGCGGCTGGAAAGGAATTGCTGAGTTCTACGAGACTCCAGGGGAGGATCATGTGTTTCACATCTTCAACCCTGATTGCGACAAAGCCAAGAGTTTGATTAAACGCATCGCTGATTTCATTAATGAACACTGA

Predicted protein sequences of Glyma04g03980

Limit To All Plant Sequences

>Glyma04g03980.1   sequence type=predicted peptide   gene model=Glyma04g03980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAPSNLEISVDVPPYLRVHKDGTQVVPAGLDSDTDVVSKDILIVPETGVTARLYRPNSTPKTAKLPLLLYFHGGAFCISSASDPLYHTSLNNLVAEANVVALSVNYRLAPEHPLPTAYQDSWSAIQWAASNAKHHQEDWIRDNVDFDRVFLAGDSAGANMGHYTALKLNNNVPTNDDFDFKVAGLIMVNPYFWGKEAIGVEITDPERKKMVDKWWSFVCPSDKGNDDPLINPFVEEAPGIEGVAGDRVLVTVAEKDILRERGELYHKRLSNCGWKGIAEFYETPGEDHVFHIFNPDCDKAKSLIKRIADFINEH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain