Report for Sequence Feature Glyma04g03960
Feature Type: gene_model
Chromosome: Gm04
Start: 2904065
stop: 2906270
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g03960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G15730 AT
Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344
SoyBase E_val: 5.00E-167 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00685 PFAM
Sulfotransferase domain
JGI ISS
UniRef100_F4JKP9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: P-loop containing nucleoside triphosphate hydrolase family protein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4JKP9_ARATH
SoyBase E_val: 2.00E-155 ISS
UniRef100_I1JTH7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTH7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g03960
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g03960
Paralog Evidence Comments
Glyma06g04120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g03960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g037200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g03960
Coding sequences of Glyma04g03960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03960.1 sequence type=CDS gene model=Glyma04g03960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAACCAAAGAATCTCCGGATATAAAATCTTTCAAGAAATTCCCATTAACATTGAGGTTGGTGGTTTTAGTTGTGGTCGTGCTTTGTGGAATATACATTTGCACAATTTGTTTAGAACAAAAAGGGGTACACACAAGTGCCAAGTTGTTTGACATCACTGTCTTCAAGCAGCCATGTTTTAATCATTCTGGTGTGGAAGAATGGGAACTGTCTTACTTGCATTATCCAGAACCCAAAATCTATAGTAGAGAAGAGTGTGCTTGCAATCCTGTTCTGTTTTTCTGCATTGTGTCAATGCAAAGATCTGGGAGCGGTTGGTTTGAGACATTTTTGAACAGTCATATTAATGTAAGCTCTAATGGAGAAATATTTTCAGTTGGGAAAAGAAGGGCCAACGTTTCTTCGATTTTAGAGACAATGGATAGAGTGTATAATCTTGATTGGTTTTCTAGTGCTTCCAAGAATGAGTGCACTGCAGCTGTTGGCTTCAAGTGGATGCTTAATCAGGGTTTGGTGGAGCATCATGAGGAAATTGTAGAATACTTTGAACGAAGACGAGTTTCTGTGATATTCCTATTCAGAAGAAACTTGCTCCGTAGAATGATTTCAGTGCTAGCGAATTCCTATGACAAAGATGCCAAGCCACTGAATGGAACTCATAAGTCTCACGTGCACTCTGCAGTGGAGGCTAACATTCTTGCCAAGTATAGACCACGACTCAACATCACATTATTGATACCAGAGCTAAATCAAACGAAGGAGACAGCTGCAAAAGCCATTGCATACTTTAAGAACACTCGCCACATTGTTCTCTATTACGAGGATCTTGTCAACAATCGCACTAAACTAAAGGATGTTCAAGAATTTCTTAGGGTGCCATACAGAGATCTAGAGAGCCGTCAAGTAAAGATACATACTGCCGCATTATCGAAGCAGATTGAAAACTGGAATGAGGTCCAGGAAGCGCTCACAGGGACGCCATACCAAAGGTTTCTCTTCAAAGACTAA
Predicted protein sequences of Glyma04g03960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g03960.1 sequence type=predicted peptide gene model=Glyma04g03960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
METKESPDIKSFKKFPLTLRLVVLVVVVLCGIYICTICLEQKGVHTSAKLFDITVFKQPCFNHSGVEEWELSYLHYPEPKIYSREECACNPVLFFCIVSMQRSGSGWFETFLNSHINVSSNGEIFSVGKRRANVSSILETMDRVYNLDWFSSASKNECTAAVGFKWMLNQGLVEHHEEIVEYFERRRVSVIFLFRRNLLRRMISVLANSYDKDAKPLNGTHKSHVHSAVEANILAKYRPRLNITLLIPELNQTKETAAKAIAYFKNTRHIVLYYEDLVNNRTKLKDVQEFLRVPYRDLESRQVKIHTAALSKQIENWNEVQEALTGTPYQRFLFKD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
