SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03920

Feature Type:gene_model
Chromosome:Gm04
Start:2857925
stop:2859194
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42680AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF617 | chr5:17114640-17115356 FORWARD LENGTH=238 SoyBaseE_val: 9.00E-102ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04759PFAM Protein of unknown function, DUF617 JGI ISS
UniRef100_B6U390UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plant-specific domain TIGR01570 family protein n=1 Tax=Zea mays RepID=B6U390_MAIZE SoyBaseE_val: 3.00E-83ISS
UniRef100_C6T9U8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9U8_SOYBN SoyBaseE_val: 5.00E-171ISS

Expression Patterns of Glyma04g03920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03920
ParalogEvidenceComments
Glyma06g04020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g036800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03920
>Glyma04g03920.1   sequence type=CDS   gene model=Glyma04g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATCGGTGCATTCAAGCCCGGGTTACTCGATGGAAAACCCGGCTTTGGCGTCGCTACTCCGTCACACGACAGGGGAAAACAAGCGTAGCAATAAATTGTCGAGCGGAGGAGGGCTTTTGAAAATGTTGAAGCTGTTTCCTATGTTGAGTTCGGGATGCAAAATGGTGGCACTGCTGGGAAGACCACGAAAGATGCTGAAGGACAGTGCGACGACCGGGACAATCTTCGGTTACCGGAAGGGGAGGGTGAGTTTGGCGATACAGGAGGACACTCGTCAAATGCCGGTATTTCTGATAGAGTTGCCGATGCTGGCGAGCGCCTTGAACAAGGAGATGGCGTCGGACATAGTGAGGATTGCGCTGGAGAGCGAGACCAAGAGCAACAAGAAGAAGCTTCTGGAGGAGTACGTGTGGGCTGTGTATTGCAATGGGAGGAAAGTTGGCTACTCCATAAGGAGGAAGCAAATGAGCGACGATGAGCTTCACGTCATGCAGCATTTGAGAGGGGTTTCCATGGGAGCGGGGGTGCTCCCCACCTCATCGGATCATAAGGATTGCGATGGGGAAATGACCTACATGAGGGCCAGGTTTGAGAGGGTCGTTGGCTCCAAGGATTCCGAAGCCTTTTATATGATTAATCCTGATTCTACTGCTCAAGGCCCTGAGTTGAGTATCTTCTTTGTTAGACCTCACTAG
Predicted protein sequences of Glyma04g03920
>Glyma04g03920.1   sequence type=predicted peptide   gene model=Glyma04g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSVHSSPGYSMENPALASLLRHTTGENKRSNKLSSGGGLLKMLKLFPMLSSGCKMVALLGRPRKMLKDSATTGTIFGYRKGRVSLAIQEDTRQMPVFLIELPMLASALNKEMASDIVRIALESETKSNKKKLLEEYVWAVYCNGRKVGYSIRRKQMSDDELHVMQHLRGVSMGAGVLPTSSDHKDCDGEMTYMRARFERVVGSKDSEAFYMINPDSTAQGPELSIFFVRPH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo