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Report for Sequence Feature Glyma04g03876

Feature Type:gene_model
Chromosome:Gm04
Start:2828355
stop:2829030
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03876
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80260AT Annotation by Michelle Graham. TAIR10: Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30175924-30180511 FORWARD LENGTH=995 SoyBaseE_val: 3.00E-23ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0000922GO-cc Annotation by Michelle Graham. GO Cellular Compartment: spindle pole SoyBaseN/AISS
GO:0005815GO-cc Annotation by Michelle Graham. GO Cellular Compartment: microtubule organizing center SoyBaseN/AISS
GO:0015631GO-mf Annotation by Michelle Graham. GO Molecular Function: tubulin binding SoyBaseN/AISS
PTHR19302Panther GAMMA TUBULIN COMPLEX PROTEIN JGI ISS
PTHR19302:SF9Panther gb def: gamma-tubulin interacting protein-like [arabidopsis thaliana] JGI ISS
PF04130PFAM Spc97 / Spc98 family JGI ISS
UniRef100_G7J5S9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gamma-tubulin complex component 4 n=1 Tax=Medicago truncatula RepID=G7J5S9_MEDTR SoyBaseE_val: 5.00E-30ISS
UniRef100_I1JTG7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTG7_SOYBN SoyBaseE_val: 6.00E-69ISS

Expression Patterns of Glyma04g03876
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g03876 not represented in the dataset
Glyma04g03876 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g03876 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g03876
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03876
>Glyma04g03876.1   sequence type=CDS   gene model=Glyma04g03876   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTTTATATGTATGTTGGAAGCTTGTTGCCATACATTGAGGGTCTTGATTCCTGGCTTTTTGAAGGAATTCTTGATGATCCTTTTGGTGAGATGTCCTTTTTTACTGATAAAGAAGTCTCAGTTGATGAGGCTGAGTTCTGGGAGAAGAGTTATTTGTTAAGAAGGCTACAGCATAGCAAATTAGATTCAGAATTCTTCTCTTCCACGAATTATGTCAATGATCCTGTGCCAGCATCAAATGACAAGGAAATGGATAGGAGAATTCCATCTCTTTGTCTAGTACAGTTAAAGGAAAAGAGCAGGGCATTTGAGATCGTCCAGCCTGTCCTTTTTTTATTAAGGATTTAA
Predicted protein sequences of Glyma04g03876
>Glyma04g03876.1   sequence type=predicted peptide   gene model=Glyma04g03876   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLYMYVGSLLPYIEGLDSWLFEGILDDPFGEMSFFTDKEVSVDEAEFWEKSYLLRRLQHSKLDSEFFSSTNYVNDPVPASNDKEMDRRIPSLCLVQLKEKSRAFEIVQPVLFLLRI*






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