Report for Sequence Feature Glyma04g03860
Feature Type: gene_model
Chromosome: Gm04
Start: 2806020
stop: 2808928
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g03860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G47710 AT
Annotation by Michelle Graham. TAIR10: Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391
SoyBase E_val: 7.00E-173 ISS
GO:0010951 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of endopeptidase activity
SoyBase N/A ISS
GO:0030162 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of proteolysis
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0004867 GO-mf
Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase inhibitor activity
SoyBase N/A ISS
GO:0004869 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase inhibitor activity
SoyBase N/A ISS
KOG2392
KOG
Serpin
JGI ISS
PTHR11461 Panther
SERINE PROTEASE INHIBITORS, SERPINS
JGI ISS
PTHR11461:SF24 Panther
gb def: serpin [petromyzon marinus]
JGI ISS
PF00079 PFAM
Serpin (serine protease inhibitor)
JGI ISS
UniRef100_G7J5Q8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Serpin-like protein n=1 Tax=Medicago truncatula RepID=G7J5Q8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JTG3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTG3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g03860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g03860
Paralog Evidence Comments
Glyma06g03960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g03860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g036200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g03860
Coding sequences of Glyma04g03860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03860.1 sequence type=CDS gene model=Glyma04g03860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACCTCCGTGAATCGATAAGCAACCAAACCGACGTCGCTCTGAGCATCACAAAGCTCCTGTTGTCGAAAAACGCTCGGGACAGTAACCTCGTGTACTCGCCGCTGTCGTTGCACGTTGTTCTGAGCATCATCGCTTCTGGCTCCAAGGGCCCCACACTCGATCAGCTTCTCTCCTTCCTCCGATCCAAGTCCACCGACCATCTCAACTCCTTCGCCTCTCAGCTCGTCGCCGTCGTGCTCTCCGACGCCGCTCCCGCCGGCGGGCCTCGCCTCTCCTTCGCCGACGGCGTGTGGGTTGAGCAATCCCTCTCTCTTCACCCTTCCTTCAAACAACTTGTCAGTGCTCAATACAAGGCCACTTTGGCTTCAGTTGATTTCCAGACCAAGGCGGTTGAAGTGACAAATGAAGTTAATTCATGGGCTGAAAAGGAGACAAATGGCCTTGTTAAAGACCTTCTTCCTCCTGGATCAGTTGACAATTCAACCAGACTTATCTTTGCAAATGCACTGTACTTCAAAGGAGCATGGAATGAGAAGTTTGATGCTTCAATAACAAAAGACTACGATTTTCACCTTCTTAATGGCAGTTCAGTCAAGGTTCCCTTCATGACGAGCAAGAAGAAGCAGTTTATTATGGCTTTTGATAGTTTCAAAGTCCTTGGTCTTCCCTACAAGCAAGGCGAAGATAAGCGCCAATTCACCATGTACTTTTTCCTTCCAGAAACAAAAGATGGGCTGTTAGCTTTGGCTGAGAAGTTGGCTTCTGAATCTGGGTTCTTGGAACGCAAGCTTCCTAACCAAAAAGTGGAAGTAGGGGACTTCAGGATCCCAAGATTCAAAATTTCTTTTGGGTTTGAAGTCTCTAATGTGCTGAAGGAGCTGGGAGTGGTTTTGCCTTTCTCTGTTGGAGGGTTGACAGAAATGGTGGACTCTCCTGTGGGTCAAAACCTATGTGTTTCCAACATATTTCACAAGTCTTTTATTGAAGTAAATGAAGAAGGCACTGAAGCTGCAGCGGCCACCTCTGCAACTATACGATTGAGGAGTGCGATGCTTCCAACTAAAATAGACTTCGTAGCTGACCATCCTTTCTTGTTCCTGATCAGAGAAGATTTAACTGGAACAGTACTCTTTATTGGGCAGGTGCTCGATCCTCGTGCGGGATGA
Predicted protein sequences of Glyma04g03860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g03860.1 sequence type=predicted peptide gene model=Glyma04g03860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDLRESISNQTDVALSITKLLLSKNARDSNLVYSPLSLHVVLSIIASGSKGPTLDQLLSFLRSKSTDHLNSFASQLVAVVLSDAAPAGGPRLSFADGVWVEQSLSLHPSFKQLVSAQYKATLASVDFQTKAVEVTNEVNSWAEKETNGLVKDLLPPGSVDNSTRLIFANALYFKGAWNEKFDASITKDYDFHLLNGSSVKVPFMTSKKKQFIMAFDSFKVLGLPYKQGEDKRQFTMYFFLPETKDGLLALAEKLASESGFLERKLPNQKVEVGDFRIPRFKISFGFEVSNVLKELGVVLPFSVGGLTEMVDSPVGQNLCVSNIFHKSFIEVNEEGTEAAAATSATIRLRSAMLPTKIDFVADHPFLFLIREDLTGTVLFIGQVLDPRAG*