Glyma04g03850 - SoyBase

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Report for Sequence Feature Glyma04g03850

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2797191
stop:	2801392
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27040	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr1:9386893-9389838 REVERSE LENGTH=563	SoyBase	E_val: 1.00E-155	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF21	Panther	NITRATE TRANSPORTER (NTL1)	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_G7J5Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR3-A n=1 Tax=Medicago truncatula RepID=G7J5Q5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTG2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03850

Paralog	Evidence	Comments
Glyma06g03950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g036100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03850

Limit To All Plant Sequences

>Glyma04g03850.1   sequence type=CDS   gene model=Glyma04g03850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATACTTCGATTGCAATTTGCAACTTGGTTTCCTATATAAATTTATGGCGAATGAACTACTAATCCTAAAGAAGCTAGCGGCACGTTCTATCCTAAAGAAGACACTAACAATGGGAATCTGCAGAAATATGGGTACCCAACCAAGGGTACAAAGAAGGCTAGGAGGAAACAGAGCTACACTTTTTGTATATGCTATGGAAGGGCTAGAGAACATGGCTTTTGTTGCCAATGCTGTGAGCCTAGTAACTTACTTCTTTGGGTACATGAACTTCAGCTTAACAAAATCTGCCACAACCCTGACCAACTTTATGGGAACTGCATTTTTACTGGCACTGGTTGGTGGATTAATCAGTGACACATATCTTTCTAGGTTCAAGACTTGTGTTCTGTTTGCCTGCATGGAATTGCTGGGATATGGTATCCTCACAGTTCAAGCACGCTTCCACCAATTAAGACCCATCCCCTGCAAAGATCTAGCAACAACCCAAATGAGTCAATGTGAGGCTGCTACAGGTGGCCATGCTGCAATACTTTATACTGGCCTCTACCTTGTTGCTTTAGGAACCGGTGGTATTAAGGCAGCTTTACCAGCCTTAGGGGCTGATCAATTTGATGAAAAAGATCCCAAGGAGGCAACTCAACTTTCAAGCTTTTTCAACTGGTTCTTGTTCAGCCTTACCATAGGAGCAATTATTGGTGTTACTTTCATTGTTTGGATTGGTGTCAACCTGGGATGGGATTGGAGCTTTATTGTATGCACATTAACAATTCTATTCGCAATTGTGTTCATATGCATGGGCAACTCGTTGTACCGAAACAATGTCCCAAAGGGAAGCCCTCTAGTTCGAATCATTCAGGTGTTTGTGGCAGCCTTTAGAAACAGAAAACTTCTGATTCCAGATAATACAGACGAGCTGCATGAGATTCATGAAAAGCAAGGAGGAGACTATTATGAAATTATTAAAAGCACGGATCAATTCAGATTCTTGGACCGGGCAGCAATTGCTAGAAGCAGCACAGGTGCAAGAACAACCTCAGGCCCCTGGAGACTTTGCACAGTGACACAAGTGGAAGAAACAAAAATCTTAGTCCGCATGCTACCAATAATACTCAGCACCATATTTATGAACACTTGTTTGGCTCAACTTCAGACTTTCACTATACAACAAAGCACCACCATGGACACCAACCTAGGGGGGTTTAAAGTGCCAGGACCCTCTGTACCAGTCATCCCTTTGCTGTTCATGTTTGTCCTAATCCCTTTATACGACCGTGTTTTCGTCCCGCTTGCTCGAAGAATCACAGGGATTCCCACCGGAATTCGACACCTTCAGAGGATTGGAATTGGTTTGGTTTTGTCTGCTGTTTCCATGGCAGTGGCTGGTTTTGTGGAAACACGCCGCAAGTCTGTGGCCATACAACACAACATGGTGGATAGCACTGAGCCTTTGCCAATAAGTGTGTTCTGGCTGGGTTTCCAATATGCTATTTTTGGAGCTGCAGACATGTTTACCCTGATAGGGCTTTTGGAGTTTTTCTATGCAGAAAGTTCAGCAGGAATGAAGTCACTTGGCACTGCAATCTCGTGGAGTTCCGTTGCATTCGGTTACTTTACAAGCACGGTGGTCGTTGAGGTGGTTAACAAAGTGAGTGGAGGCTGGCTGGCTAGTAACAACTTGAATAGAGACAACCTCAACTACTTCTACTGGTTATTGTCTGTGTTAAGCGTTGTAAACTTTGGATTCTATTTGGTTTGTGCTTCTTGGTATAGATACAAAACGGTGGAAAACGAGCAAGGTGATTCAAAAGATAATGTTGACATGGCCAAGGTTTAG

Predicted protein sequences of Glyma04g03850

Limit To All Plant Sequences

>Glyma04g03850.1   sequence type=predicted peptide   gene model=Glyma04g03850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYFDCNLQLGFLYKFMANELLILKKLAARSILKKTLTMGICRNMGTQPRVQRRLGGNRATLFVYAMEGLENMAFVANAVSLVTYFFGYMNFSLTKSATTLTNFMGTAFLLALVGGLISDTYLSRFKTCVLFACMELLGYGILTVQARFHQLRPIPCKDLATTQMSQCEAATGGHAAILYTGLYLVALGTGGIKAALPALGADQFDEKDPKEATQLSSFFNWFLFSLTIGAIIGVTFIVWIGVNLGWDWSFIVCTLTILFAIVFICMGNSLYRNNVPKGSPLVRIIQVFVAAFRNRKLLIPDNTDELHEIHEKQGGDYYEIIKSTDQFRFLDRAAIARSSTGARTTSGPWRLCTVTQVEETKILVRMLPIILSTIFMNTCLAQLQTFTIQQSTTMDTNLGGFKVPGPSVPVIPLLFMFVLIPLYDRVFVPLARRITGIPTGIRHLQRIGIGLVLSAVSMAVAGFVETRRKSVAIQHNMVDSTEPLPISVFWLGFQYAIFGAADMFTLIGLLEFFYAESSAGMKSLGTAISWSSVAFGYFTSTVVVEVVNKVSGGWLASNNLNRDNLNYFYWLLSVLSVVNFGFYLVCASWYRYKTVENEQGDSKDNVDMAKV*

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