Glyma04g03840 - SoyBase

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Report for Sequence Feature Glyma04g03840

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2791079
stop:	2793910
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06870	AT	Annotation by Michelle Graham. TAIR10: Peptidase S24/S26A/S26B/S26C family protein \| chr1:2108832-2110642 FORWARD LENGTH=367	SoyBase	E_val: 3.00E-139	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG0171	KOG	Mitochondrial inner membrane protease, subunit IMP1	JGI		ISS
PTHR12383	Panther	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	JGI		ISS
PTHR12383:SF1	Panther	MITOCHONDRIAL INNER MEMBRANE PROTEASE	JGI		ISS
PF00717	PFAM	Peptidase S24-like	JGI		ISS
PF10502	PFAM	Peptidase S26	JGI		ISS
UniRef100_G7J5Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thylakoidal processing peptidase n=2 Tax=Medicago truncatula RepID=G7J5Q2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTG1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JTG1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03840

Paralog	Evidence	Comments
Glyma06g03940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g036000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03840

Limit To All Plant Sequences

>Glyma04g03840.3   sequence type=transcript   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATTGTATCCTTTTAGATTTAATATAATTTACATTTAAAAATAAAAGAGATGGGACAACTTTAGGTAATAACTTAAATAAAGAATAAAGCAAGTCCGATAACGTGAAGCGAAGCAAAGAGTAGGAGCCGCCGTATATTAATAAAACCCACTTCCTGCGACTTTTTTTGTTTTCATTTGGTTTCTTCCTTCTCACACTTCCCCCAATTCCCAAACCAAACCCTCTCTCTTCCGGCGTTCTGGGGGTGGCGTCGCCGGCGATTCCCCCCTCCGGTTCCCTCTCCACCCTTCAATTCAACCCTCTCGTCTTCGCTTCACTGATTCCCTCTTTCAAAATGCTTCCGATCGCTTGCTAGGGTTTTCCCTCTCCCAAATCTCCTCCTCGGAAAGCACCCTGTACCTTTTATTCCTCCGACTAATCAACTTCTTTGCTATGGCTATTCGTGTAACCTTTTCCTTTTCGGGCTATGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGTTGCGTCCAGGAATGCTGGATCCGTACGCGCCTCTCTGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGAGTCCGCAATTTTGCCGGGCCCAAGCCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCACCGGGGAGTTCCTCGGCGACGGCTGCAAGAGCCCAATCATATTGGGCCTGATTTCGATCATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCCTTCAAAACCACTTCGATCGTTCCCTTCTTGCCTGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCACTTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGACACCGAATCCAATTTTGCCAAGACTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTGTTACTGTTAGTTTGCTCTTTAAATCGTCCTTGGCTGAACCAAGATCAATTCCCTCTTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTCTAACCGAGAAGGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTTAAAGCGCCTCCTTGTTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGGTAAATGGTGCTGCTGAAGAACGGCAATTTGTAGTAGAGCCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGACAATCGGAACAACAGCTTTGATTCTCATAACTGGTAATTTTTCAGTCCCTTTCAAGCTGACTTTTCTCTGTTTATGTTGGAGGATATTTTAGCCTAGGTCGATGACAAAGTTTGGCCCATTTGTTGATGCTGTTTCCTCAAAACTTCTAGCTTATGGGCCCTCTCCCAGTTGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTATCTGACACTGATACCCTAAGTAAACTCCCACCTGGGAACAAACCTGTGGCAATTTCTTGACAAGATTCCCGCTGCTTTCTGAAGGTGATGAAGGTTTCCAGATACGTTCATCTATTCTAAATTGACAGTTTCTCCCGTCTTTGCCTGGGAATGAGCTGTTCGGAGATTCTCTTAGAAGAGCCAGCTTGACCTGACTTTGCATGCAGTTTGGGATGAATATCTTATTCATTGATACAGATTTGTCAATGACCTAATAATGCCATTATGCGTTAATTTGTGCCATCTGAGATGTATTTCTATTGCTGAAGTGCGGGGAGAAAAAAAGAATAAAAAAAAAATGATGATTTTACCCCTCAAAAATGAAACATGATGATTGATTTGTTTTGTATTCTTTCATATAAGCTCCATAATCAAGCCTCCTCCTGATTTGAATCTATAATGCCATTCAGTCATACATGAAATTGTATGGGCACGATTATGGTTGCCCATTTTAAAATCAAGTAAGAATGCAATTTCCCTCTTTCCCGGTGTTTGTGTGTGTGTGCTTTTTTTATATCTTATGCCATAATAGTTGTGGGATATTCGGCGGGTCAGATGGGCCATCGATCCACAAAACACTAGACAGGTACGGCTCAGGTCATTTGATTCGTAAATCAGATTCTATCGAGCAGTTTAGATACAGTATCTGACCTGACTACCTGATTGAATATTTTTCGTTTACACTTTGGATAGCAAATGAAATGATAAGG

>Glyma04g03840.5   sequence type=transcript   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATTGTATCCTTTTAGATTTAATATAATTTACATTTAAAAATAAAAGAGATGGGACAACTTTAGGTAATAACTTAAATAAAGAATAAAGCAAGTCCGATAACGTGAAGCGAAGCAAAGAGTAGGAGCCGCCGTATATTAATAAAACCCACTTCCTGCGACTTTTTTTGTTTTCATTTGGTTTCTTCCTTCTCACACTTCCCCCAATTCCCAAACCAAACCCTCTCTCTTCCGGCGTTCTGGGGGTGGCGTCGCCGGCGATTCCCCCCTCCGGTTCCCTCTCCACCCTTCAATTCAACCCTCTCGTCTTCGCTTCACTGATTCCCTCTTTCAAAATGCTTCCGATCGCTTGCTAGGGTTTTCCCTCTCCCAAATCTCCTCCTCGGAAAGCACCCTGTACCTTTTATTCCTCCGACTAATCAACTTCTTTGCTATGGCTATTCGTGTAACCTTTTCCTTTTCGGGCTATGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGTTGCGTCCAGGAATGCTGGATCCGTACGCGCCTCTCTGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGAGTCCGCAATTTTGCCGGGCCCAAGCCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCACCGGGGAGTTCCTCGGCGACGGCTGCAAGAGCCCAATCATATTGGGCCTGATTTCGATCATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCCTTCAAAACCACTTCGATCGTTCCCTTCTTGCCTGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCACTTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGACACCGAATCCAATTTTGCCAAGACTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTGTTACTGTTAGTTTGCTCTTTAAATCGTCCTTGGCTGAACCAAGATCAATTCCCTCTTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTCTAACCGAGAAGGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTTAAAGCGCCTCCTTGTTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGGTAAATGGTGCTGCTGAAGAACGGCAATTTGTAGTAGAGCCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGACAATCGGAACAACAGCTTTGATTCTCATAACTGGGGCCCTCTCCCAGTTGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTATCTGACACTGATACCCTAAGTAAACTCCCACCTGGGAACAAACCTGTGGCAATTTCTTGACAAGATTCCCGCTGCTTTCTGAAGGTGATGAAGGTTTCCAGATACGTTCATCTATTCTAAATTGACAGTTTCTCCCGTCTTTGCCTGGGAATGAGCTGTTCGGAGATTCTCTTAGAAGAGCCAGCTTGACCTGACTTTGCATGCAGTTTGGGATGAATATCTTATTCATTGATACAGATTTGTCAATGACCTAATAATGCCATTATGCGTTAATTTGTGCCATCTGAGATGTATTTCTATTGCTGAAGTGCGGGGAGAAAAAAAGAATAAAAAAAAAATGATGATTTTACCCCTCAAAAATGAAACATGATGATTGATTTGTTTTGTATTCTTTCATATAAGCTCCATAATCAAGCCTCCTCCTGATTTGAATCTATAATGCCATTCAGTCATACATGAAATTGTATGGGCACGATTATGGTTGCCCATTTTAAAATCAAGTAAGAATGCAATTTCCCTCTTTCCCGGTGTTTGTGTGTGTGTGCTTTTTTTATATCTTATGCCATAATAGTTGTGGGATATTCGGCGGGTCAGATGGGCCATCGATCCACAAAACACTAGACAGGTACGGCTCAGGTCATTTGATTCGTAAATCAGATTCTATCGAGCAGTTTAGATACAGTATCTGACCTGACTACCTGATTGAATATTTTTCGTTTACACTTTGGATAGCAAATGAAATGATAAGG

Coding sequences of Glyma04g03840

Limit To All Plant Sequences

>Glyma04g03840.2   sequence type=CDS   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTGTAACCTTTTCCTTTTCGGGCTATGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGTTGCGTCCAGGAATGCTGGATCCGTACGCGCCTCTCTGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGAGTCCGCAATTTTGCCGGGCCCAAGCCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCACCGGGGAGTTCCTCGGCGACGGCTGCAAGAGCCCAATCATATTGGGCCTGATTTCGATCATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCCTTCAAAACCACTTCGATCGTTCCCTTCTTGCCTGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCACTTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGACACCGAATCCAATTTTGCCAAGACTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTGTTACTGTTAGTTTGCTCTTTAAATCGTCCTTGGCTGAACCAAGATCAATTCCCTCTTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTCTAACCGAGAAGGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTTAAAGCGCCTCCTTGTTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTATGCTTTTTTATATCTTTTTGA

>Glyma04g03840.3   sequence type=CDS   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTGTAACCTTTTCCTTTTCGGGCTATGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGTTGCGTCCAGGAATGCTGGATCCGTACGCGCCTCTCTGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGAGTCCGCAATTTTGCCGGGCCCAAGCCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCACCGGGGAGTTCCTCGGCGACGGCTGCAAGAGCCCAATCATATTGGGCCTGATTTCGATCATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCCTTCAAAACCACTTCGATCGTTCCCTTCTTGCCTGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCACTTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGACACCGAATCCAATTTTGCCAAGACTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTGTTACTGTTAGTTTGCTCTTTAAATCGTCCTTGGCTGAACCAAGATCAATTCCCTCTTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTCTAACCGAGAAGGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTTAAAGCGCCTCCTTGTTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGGTAAATGGTGCTGCTGAAGAACGGCAATTTGTAGTAGAGCCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGACAATCGGAACAACAGCTTTGATTCTCATAACTGGTAA

>Glyma04g03840.5   sequence type=CDS   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTGTAACCTTTTCCTTTTCGGGCTATGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGTTGCGTCCAGGAATGCTGGATCCGTACGCGCCTCTCTGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGAGTCCGCAATTTTGCCGGGCCCAAGCCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCACCGGGGAGTTCCTCGGCGACGGCTGCAAGAGCCCAATCATATTGGGCCTGATTTCGATCATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCCTTCAAAACCACTTCGATCGTTCCCTTCTTGCCTGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCACTTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGACACCGAATCCAATTTTGCCAAGACTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTGTTACTGTTAGTTTGCTCTTTAAATCGTCCTTGGCTGAACCAAGATCAATTCCCTCTTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTCTAACCGAGAAGGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTTAAAGCGCCTCCTTGTTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGGTAAATGGTGCTGCTGAAGAACGGCAATTTGTAGTAGAGCCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGACAATCGGAACAACAGCTTTGATTCTCATAACTGGGGCCCTCTCCCAGTTGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTATCTGACACTGATACCCTAAGTAAACTCCCACCTGGGAACAAACCTGTGGCAATTTCTTGA

Predicted protein sequences of Glyma04g03840

Limit To All Plant Sequences

>Glyma04g03840.2   sequence type=predicted peptide   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRVTFSFSGYVAQSLASSAGVRVANSRCVQECWIRTRLSGATQKTDLDSSAGGVRNFAGPKPNCWAQSTYSTLTGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTTSIVPFLPGSKWLPCNESVPDPTTSWEVDKGGTRRVVSDTESNFAKTSWLSRLMNVCSEDAKAAFTAVTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKVSFFFRKPDVSDIVIFKAPPCLEEFGFSSSDVFIKRIVAKAGDTVEVCFFISF*

>Glyma04g03840.3   sequence type=predicted peptide   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRVTFSFSGYVAQSLASSAGVRVANSRCVQECWIRTRLSGATQKTDLDSSAGGVRNFAGPKPNCWAQSTYSTLTGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTTSIVPFLPGSKWLPCNESVPDPTTSWEVDKGGTRRVVSDTESNFAKTSWLSRLMNVCSEDAKAAFTAVTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKVSFFFRKPDVSDIVIFKAPPCLEEFGFSSSDVFIKRIVAKAGDTVEVRDGKLLVNGAAEERQFVVEPLAYEMDPMVVPEGYVFVMGDNRNNSFDSHNW*

>Glyma04g03840.5   sequence type=predicted peptide   gene model=Glyma04g03840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRVTFSFSGYVAQSLASSAGVRVANSRCVQECWIRTRLSGATQKTDLDSSAGGVRNFAGPKPNCWAQSTYSTLTGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTTSIVPFLPGSKWLPCNESVPDPTTSWEVDKGGTRRVVSDTESNFAKTSWLSRLMNVCSEDAKAAFTAVTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKVSFFFRKPDVSDIVIFKAPPCLEEFGFSSSDVFIKRIVAKAGDTVEVRDGKLLVNGAAEERQFVVEPLAYEMDPMVVPEGYVFVMGDNRNNSFDSHNWGPLPVENIVGRSMFRYWPPSKVSDTDTLSKLPPGNKPVAIS*

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