Glyma04g03830 - SoyBase

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Report for Sequence Feature Glyma04g03830

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2788035
stop:	2789582
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33970	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr4:16279795-16281894 REVERSE LENGTH=699	SoyBase	E_val: 6.00E-176	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005199	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cell wall	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF665	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_G7J5Q1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase BRI1-like protein n=1 Tax=Medicago truncatula RepID=G7J5Q1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JTF7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03830

Paralog	Evidence	Comments
Glyma06g03930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g03830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03830

Limit To All Plant Sequences

>Glyma04g03830.1   sequence type=CDS   gene model=Glyma04g03830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCGTGTTGCTCTCTTCTATTGCTCTCCTTAATATTCCTTCTTTCATCATCTGTCTCTCATGCACTTTCCAATGCCGAAGTCTCTTTCATTGCTCGTCGCCAATTGTTGCACTTACACGAGAATGATGAATTATCTGACAACTACGTAGATAATTATGAAACAAATTTAACTTTCTCCAACCCCAGACTAAAACTTGCATACATTGCACTTGAGGCATTGAAAAAAGCAATATACTCAGACCCATCAAATTTCACAGCTAATTGGGAGGGCCAAAATGTTTGCTCTTATAATGGAGTTTTTTGTGAAAAGGCTCTAGATGATCCAAAGATTGACGTTGTAGCAGGGATTGACCTTAACCATGCAGACATCGCAGGTTACATTCCCCCCGAAATCGGATTGTTAACCGACCTTGCACTTTTTCATATAAACTCAAACAGGTTTTGTGGGGTTCTCCCAAAAAGTTTTTCCAAGCTTAAGCTTCTTTATGAGGCAGACATCAGCAACAATCGCTTTGTTGGGCGATTCCCTGAGCCTGTGCTTCCAATTCCAGACCTTAAATTCCTTGACCTTAGGTTCAATAACTTTGAAGGGGAACTACCTTCTGAGCTTTTCAACAAAAGCCTCGACGCTATCTTTTTGAACAATAATCGCTTCACGTCCACAATTCCTCAGAACCTGGGATCTTCTCCAGCTTCAGTTGTGGTTTTTGCCAATAACAATCTCACGGGTTGCGTGCCTTCAAGCATTGGCAACATGACAAAGACACTGAACGAGTTTGTTTTGACCAATAACAACCTCACTGGTTGCTTGCCGGCAGAGATCGGAAAGCTCGAAAAAGTTACTGTGTTTGACATAAGCCAAAACAATTTTGTTGGCATGTTGCCAAGGACCTTAAATGGGCTTAAGAGCGTGGAGCACTTATCCATTGAACACAATAAGCTCACAGGTTTTGTCCCACGTAATGTTTGCAGCTTGTCCAATTTGGTCAACTTCACATTCTCTTATAACTATTTCAATGGTGAGGAAGAAGGTTGTGTGCCTCCTAAGAAGGATGTTGTGTTGGATGATGAGAGCAATTGCATACCGGATAGGCCAAAACAAAAGGTCGCAAACATTTGCAATGTGGTGATAAGTAAGCCTGTGGATTGTAGCAAAGCGCAGTGTGGAAGTGGGAACCCATCTCATTCTTCCAATCCTCCAACAACACCATCTGGGTCACAGCCTTCCAATCCTCCTAAAGTTGAGAAACCTACACCAACACCAACACCAAAGCCACAACCTCAACCTACCCCTTCAACACCAAAGCCCCAACCCAACCCAACCCCTTCTCCTTCTAATCCTCCAACACCAAAGCCACAACCCCCTTCTACCCCTAACCCTCCAACACCAAAGCCACAAGAACCCAAACCTACCCCTTTTCCCTCAAATCCTCCAACACCAAAGCCACAAGAACCCAAACCTGCCCCTTCTCCCTCAAATCCTCCAACACCAAAGTCACAAGAACCCAAACCTACCCCTTCCCCCTCAAATCCTCCAACACCA

Predicted protein sequences of Glyma04g03830

Limit To All Plant Sequences

>Glyma04g03830.1   sequence type=predicted peptide   gene model=Glyma04g03830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCCSLLLLSLIFLLSSSVSHALSNAEVSFIARRQLLHLHENDELSDNYVDNYETNLTFSNPRLKLAYIALEALKKAIYSDPSNFTANWEGQNVCSYNGVFCEKALDDPKIDVVAGIDLNHADIAGYIPPEIGLLTDLALFHINSNRFCGVLPKSFSKLKLLYEADISNNRFVGRFPEPVLPIPDLKFLDLRFNNFEGELPSELFNKSLDAIFLNNNRFTSTIPQNLGSSPASVVVFANNNLTGCVPSSIGNMTKTLNEFVLTNNNLTGCLPAEIGKLEKVTVFDISQNNFVGMLPRTLNGLKSVEHLSIEHNKLTGFVPRNVCSLSNLVNFTFSYNYFNGEEEGCVPPKKDVVLDDESNCIPDRPKQKVANICNVVISKPVDCSKAQCGSGNPSHSSNPPTTPSGSQPSNPPKVEKPTPTPTPKPQPQPTPSTPKPQPNPTPSPSNPPTPKPQPPSTPNPPTPKPQEPKPTPFPSNPPTPKPQEPKPAPSPSNPPTPKSQEPKPTPSPSNPPTP

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