Glyma04g03810 - SoyBase

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Report for Sequence Feature Glyma04g03810

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2780277
stop:	2784573
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47640	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). \| chr1:17518409-17519998 REVERSE L	SoyBase	E_val: 9.00E-149	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3236	KOG	Predicted membrane protein	JGI		ISS
PTHR12869	Panther	SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF09767	PFAM	Predicted membrane protein (DUF2053)	JGI		ISS
UniRef100_G7J5Q0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7J5Q0_MEDTR	SoyBase	E_val: 2.00E-161	ISS
UniRef100_I1JTF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTF4_SOYBN	SoyBase	E_val: 7.00E-165	ISS

Expression Patterns of Glyma04g03810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03810

Paralog	Evidence	Comments
Glyma06g03910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g035800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03810

Limit To All Plant Sequences

>Glyma04g03810.2   sequence type=transcript   gene model=Glyma04g03810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAAAACCAAACAAAAGAAGTGATTAGTTAGGAAGTAGCAGCAAATATTACTATACTAAAATACTAGTAGGAGTGGATTGAGGAGAGAACGAGAAGAAGGTGAAGTCGAAGAAGTGAAGGTGTTGAGTGTTTTCTTCTTGTTTGGATCTGAGAGAGAAGAGCGAGCGATGACGGTCTTTCATTTCTTCAACTGCGCCATTCTCACCTTCGGCCCCCACGCCGTCTACTATTCTGCCACGCCCTTATCTGAGTATGATACACTCGGAACCTCTATCAAAGCCGCTGTTGTTTATCTTGCAACGGCATTAGTGAAGCTTATTTGTCTAGCTACTTTTCTCAAGGTTTCGGAGAGTGATAGCTTTGATCCGTATCAGGAGTTTTTGAAGGCATTAATAGGCTTTATAGATGTTGCTGGGCTTTATTTTGCCTTGACCCAGTTGACTCACAGGAACATCTCTCAGAATCATAAATTTCAAGCTGTTGGACTTGGCTGGGCGTTTGCTGATTCTGTACTGCATCGATTGGCTCCTCTTTGGGTTGGTGCCAGAGGATTAGAATTTACTTGGGATTACATTCTTCAGGGCCTTGAAGCTAATGCAAATTTGGTGTTGAGCATATCCCTCGCTGCACTTGGATCTTTGATGTGGCTTCGAAAAAATAAACCCAAGACCCTCATCCCTATTATATATTTGAGTGCAGGGATTGTAGCAACTATGCCATCTATCACAAGGTCTTTCCTGGTTCATTACAGTTACTGTTATGATTATATGTAAATGTGTAATTTCATGCTCAAATTAATATTTTCTATGATTTTTTCCTATGCAATTCAAGCCTTTGAATTGAGGACCAAGCATAAATATTTCTTGAGCCCACCTTTTTCATAGACTGTTGCTATCATATTTTTCCTTCCTGTCTCCCCCTACAAATGGTCCCTTAGGATAAGATGGCCCATCATATGGTGTTGGTACAAGTATTAGATATGTTACTTGGCTAGATGGCTGTAATTATTTAGTCAGCCATAGCATGGAACTTTTTATGTCATTTGCTGTAGTGTAGTGTTTGATGAACTGTCTTCTGCAGCTATCTGAGGCGTGGATTGGGGTGGCACTTTCCCAAAGTGGTAGGTTTTGAGCTCTTCACATCCCTGGTGATGGCTTTTATAAGCTGGCAACTGTTTGCTGCATGTCAGAGACCTTCAGTGTGAGAAACCTCATTACATAATGATCGAATCCTGCTTAACTATTTTCTGGCTAGAGTTTTGATCCAGGGTCATCTGTTTCTTTTTGCTGCTGCAATGCTGTTTCTTTAAATTTCAAGAATGTTTTCTTGCGGTAGAATGTTGGCTGCAATTCATTAGAAATTTTTGTTTATTCAGAAAATTAGAGATATTTACCCCGAACATCTGGGATTGATAGGTTGCAAACACTTTCTCTTTGAAACCCCGTTGGATATCTCATTAATCCACGTCCCTTCCATTATTAACCACTCACGCCCTGTCCATTGCAAACTAGATTATTCATTCTTT

Coding sequences of Glyma04g03810

Limit To All Plant Sequences

>Glyma04g03810.1   sequence type=CDS   gene model=Glyma04g03810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGTCTTTCATTTCTTCAACTGCGCCATTCTCACCTTCGGCCCCCACGCCGTCTACTATTCTGCCACGCCCTTATCTGAGTATGATACACTCGGAACCTCTATCAAAGCCGCTGTTGTTTATCTTGCAACGGCATTAGTGAAGCTTATTTGTCTAGCTACTTTTCTCAAGGTTTCGGAGAGTGATAGCTTTGATCCGTATCAGGAGTTTTTGAAGGCATTAATAGGCTTTATAGATGTTGCTGGGCTTTATTTTGCCTTGACCCAGTTGACTCACAGGAACATCTCTCAGAATCATAAATTTCAAGCTGTTGGACTTGGCTGGGCGTTTGCTGATTCTGTACTGCATCGATTGGCTCCTCTTTGGGTTGGTGCCAGAGGATTAGAATTTACTTGGGATTACATTCTTCAGGGCCTTGAAGCTAATGCAAATTTGGTGTTGAGCATATCCCTCGCTGCACTTGGATCTTTGATGTGGCTTCGAAAAAATAAACCCAAGACCCTCATCCCTATTATATATTTGAGTGCAGGGATTGTAGCAACTATGCCATCTATCACAAGCTATCTGAGGCGTGGATTGGGGTGGCACTTTCCCAAAGTGGTAGGTTTTGAGCTCTTCACATCCCTGGTGATGGCTTTTATAAGCTGGCAACTGTTTGCTGCATGTCAGAGACCTTCAGTGTGA

>Glyma04g03810.2   sequence type=CDS   gene model=Glyma04g03810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGTCTTTCATTTCTTCAACTGCGCCATTCTCACCTTCGGCCCCCACGCCGTCTACTATTCTGCCACGCCCTTATCTGAGTATGATACACTCGGAACCTCTATCAAAGCCGCTGTTGTTTATCTTGCAACGGCATTAGTGAAGCTTATTTGTCTAGCTACTTTTCTCAAGGTTTCGGAGAGTGATAGCTTTGATCCGTATCAGGAGTTTTTGAAGGCATTAATAGGCTTTATAGATGTTGCTGGGCTTTATTTTGCCTTGACCCAGTTGACTCACAGGAACATCTCTCAGAATCATAAATTTCAAGCTGTTGGACTTGGCTGGGCGTTTGCTGATTCTGTACTGCATCGATTGGCTCCTCTTTGGGTTGGTGCCAGAGGATTAGAATTTACTTGGGATTACATTCTTCAGGGCCTTGAAGCTAATGCAAATTTGGTGTTGAGCATATCCCTCGCTGCACTTGGATCTTTGATGTGGCTTCGAAAAAATAAACCCAAGACCCTCATCCCTATTATATATTTGAGTGCAGGGATTGTAGCAACTATGCCATCTATCACAAGGTCTTTCCTGGTTCATTACAGTTACTGTTATGATTATATGTAA

Predicted protein sequences of Glyma04g03810

Limit To All Plant Sequences

>Glyma04g03810.1   sequence type=predicted peptide   gene model=Glyma04g03810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSIKAAVVYLATALVKLICLATFLKVSESDSFDPYQEFLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYILQGLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYLSAGIVATMPSITSYLRRGLGWHFPKVVGFELFTSLVMAFISWQLFAACQRPSV*

>Glyma04g03810.2   sequence type=predicted peptide   gene model=Glyma04g03810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSIKAAVVYLATALVKLICLATFLKVSESDSFDPYQEFLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYILQGLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYLSAGIVATMPSITRSFLVHYSYCYDYM*

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