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Report for Sequence Feature Glyma04g03780

Feature Type:gene_model
Chromosome:Gm04
Start:2762654
stop:2764820
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31940AT Annotation by Michelle Graham. TAIR10: cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524 SoyBaseE_val: 1.00E-179ISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071281GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004497GO-mf Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_B9MVH7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 n=1 Tax=Populus trichocarpa RepID=B9MVH7_POPTR SoyBaseE_val: 0ISS
UniRef100_I1JTF1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTF1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g03780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03780
ParalogEvidenceComments
Glyma06g03880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g035500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03780
>Glyma04g03780.1   sequence type=CDS   gene model=Glyma04g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTCACGATTCAGTACCTGGAGGCATCAGTTGCCGCAATTATTGGCATAATCTTAGTTTCTTACTTCATCAAAAGGGCTACAGCAGGTTCTGCCCGCAAGCCACCGGCAGCAGGCGGTGGCTGGCCTTTGATCGGTCATCTTCACCTCTTAGGTGGTTCCACTCAGCCACCTTACATAACCTTAGGATCCTTGGCAGACAAGTATGGCCCAATATTCAGCATGAGAATTGGTGTGCATCATGCTGTTGTGGTGAGCTCTTGGGAGTTAGCAAAAGAGTGTTTCACCACTCTTGACGTCGTTATCTCTTCTCGTCCAAAATTCACCGCTGCAAAAATCTTGGGATACAACTATGCTAATTTTGGGTTCACCCCTTACGGAGACTTCTGGCGTGTGATGCGCAAGATAGCTGCTTCAGAGTTGCTTTCCACTGCCCGCTTTGAACTTCTTCAACGTATCAGAGACTCCGAGATGCAGATCTCGTTGAAAGAATTATACAGAACATGGGTGGACAAAAGAGGCGTGTCAGATGATTTGTTGGTGGAGATGAAGCAGTGGTTTGGAGACGTGAATCTGAACGTCATTCTCAGGATGATTTCGGGGAAGCGATACTCCGCTAAAAGTGAAGATGATCTGCAACAAGTAAGGAGAATTCGGAGGGTTTTCAGAGAGTTCTTTCGGTTGACAGGGTTGTTTGTGGTTGGGGACGCAATTCCCTTTCTTGGGTGGCTTGATTTGGGAGGGGAAGTGAAGGAGATGAAAAAGACGGCTATAGAAATGGATAACATCGTTTCTGAATGGCTAGAAGAACATAAGCAGCAGATAACAGATTCAGGTGACACCAAAACAGAACAAGACTTCATTGATGTCTTGCTCTTCGTCCTTAAAGGCGTCGACCTTGCCGGTTATGATTTTGACACTGTCATTAAAGCCACATGCACGATGCTGATTGCCGGAGCAACTGATACTACTGCAGTTACCATGACATGGGCACTGTCATTGTTGCTGAATAATCACCATGCTTTGAAGAAAGTAAAAGATGAATTGGATGAGCACGTGGGCAAAGAAAGATTAGTGAATGAATCTGACATTAACAAATTAGTTTACCTTCAAGCTGTGGTTAAAGAGACACTGCGATTGTATCCAGCTGGGCCATTCTCGGGTCCGCGTGAATTTACAGAAAACTGTACTTTAGGTGGTTACAAAATAGAAGCAGGTACTCGATTTATGTTGAATATTTGGAAATTGCATAGAGATCCTCGTGTATGGTCAAATCCATTAGAGTTTCAGCCAGAAAGGTTCTTGAACACCCATAAGAATGTTGATGTGAAGGGTCAGCATTTTGAGCTCCTTCCCTTTGGTGGTGGAAGAAGATCGTGCCCTGGCATATCATTTGGCCTTCAAATGTCACACTTGGCATTAGCTTCTTTTTTGCAGGCATTTGAAATCACAACTCCATCCAATGCTCAAGTTGATATGAGCGCCACATTTGGACTCACAAATATGAAAACTACCCCGCTTGAGGTTTTAGTCAGACCCGTTTTATCACATCAGCTACTCTTTGTCGATGAAGCTTAG
Predicted protein sequences of Glyma04g03780
>Glyma04g03780.1   sequence type=predicted peptide   gene model=Glyma04g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLTIQYLEASVAAIIGIILVSYFIKRATAGSARKPPAAGGGWPLIGHLHLLGGSTQPPYITLGSLADKYGPIFSMRIGVHHAVVVSSWELAKECFTTLDVVISSRPKFTAAKILGYNYANFGFTPYGDFWRVMRKIAASELLSTARFELLQRIRDSEMQISLKELYRTWVDKRGVSDDLLVEMKQWFGDVNLNVILRMISGKRYSAKSEDDLQQVRRIRRVFREFFRLTGLFVVGDAIPFLGWLDLGGEVKEMKKTAIEMDNIVSEWLEEHKQQITDSGDTKTEQDFIDVLLFVLKGVDLAGYDFDTVIKATCTMLIAGATDTTAVTMTWALSLLLNNHHALKKVKDELDEHVGKERLVNESDINKLVYLQAVVKETLRLYPAGPFSGPREFTENCTLGGYKIEAGTRFMLNIWKLHRDPRVWSNPLEFQPERFLNTHKNVDVKGQHFELLPFGGGRRSCPGISFGLQMSHLALASFLQAFEITTPSNAQVDMSATFGLTNMKTTPLEVLVRPVLSHQLLFVDEA*






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