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Report for Sequence Feature Glyma04g03730

Feature Type:gene_model
Chromosome:Gm04
Start:2729867
stop:2732533
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48460AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17911469-17913149 FORWARD LENGTH=340 SoyBaseE_val: 8.00E-112ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K7V1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7V1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LP79UniRef Annotation by Michelle Graham. Most informative UniRef hit: T1N15.7 n=1 Tax=Arabidopsis thaliana RepID=Q9LP79_ARATH SoyBaseE_val: 4.00E-107ISS

Expression Patterns of Glyma04g03730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03730
ParalogEvidenceComments
Glyma06g03820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g034900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03730
>Glyma04g03730.2   sequence type=CDS   gene model=Glyma04g03730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTTCAGACCCTTTGTTGCGCTCTTCCCTCTCAACCACTTCACTCTTCCAATCATCGTATTCTATCATCACCAGCGTTTGGAATCCGCGCTCCATTCACAAATCAAAGACAAAGATTTCACTTCGGAAACGCCTCAAAATGTTTAAAATGGGTGATTAAAGAGCCTTCACTTTTGGGATTGAGCAAATTCCAGAGGCTTCTTGTACATTCTTCTGATTCCAATTTAAACGGTGGCTTGGAAGTTCATCCAAAACAAAGTTCTAGTGTGCCCGTTACTACATTTAACGGGGCGGAACCGTTTCATGGTAAATCAGGTTCCGTCTCTTTTTGTGGCCTGACACACCAATCTGTAGAAGAAGGGAAATTGGAATCTTCCCCCTTTGAAGGAAAGGGTGGCTCTTTCTTATGGGTCTTAGCTCCTGCTGCGTTCATAGCGTCTTTGATTTTGCCACAGTTTTTTGTTGACAATGTGGTTGAAGCTTTCCTTAATAATGTGATTTTAATAGATATTGTGACTATATTCTCTCACGAGGTCCTGTTCTACATTGGACTAGCGACATTCTTGCATGTGACTGATTGTGTCCAGAGGCCGTATTTGCAGTACAGCTCAAAAAGATGGGGTCTTATTACTGGCCTCAGAGGATACCTATTCTCTGCTTTCTTCACCATGGGTTTGAAGATTATTGCTCCTCTCATTCTTTTGTTTGTGACATGGTCAGCAATTCGCATTGCAGCATTTGTTGCTATAACTCCATTTTTAGTTGGCTGTGTTGCACAAATTGCATTTGAGAAAGCTTTGGACAATCGTGGGTCATCTTGCTGGCCTCTAGTCCCGGTTATATTTGAGGTATACAGACTATATCAGCTTACAAAAGCTGCTAATTTTGCCGAGAAGTTGTTATTCTCTATGAAGGGGCTTCCTGCGGGCCCTGAATTGGTAGAACGAAGTGGAGCTTTGTTCGCAATGTTAATCACCTTCCAAGTACTGGGGATTGTGTGCCTTTGGTCATTGATGACATTTCTTTTGAGGCTATTCCCTTCTAGACCTGTAGCAGATCATTACTGA
Predicted protein sequences of Glyma04g03730
>Glyma04g03730.2   sequence type=predicted peptide   gene model=Glyma04g03730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELQTLCCALPSQPLHSSNHRILSSPAFGIRAPFTNQRQRFHFGNASKCLKWVIKEPSLLGLSKFQRLLVHSSDSNLNGGLEVHPKQSSSVPVTTFNGAEPFHGKSGSVSFCGLTHQSVEEGKLESSPFEGKGGSFLWVLAPAAFIASLILPQFFVDNVVEAFLNNVILIDIVTIFSHEVLFYIGLATFLHVTDCVQRPYLQYSSKRWGLITGLRGYLFSAFFTMGLKIIAPLILLFVTWSAIRIAAFVAITPFLVGCVAQIAFEKALDNRGSSCWPLVPVIFEVYRLYQLTKAANFAEKLLFSMKGLPAGPELVERSGALFAMLITFQVLGIVCLWSLMTFLLRLFPSRPVADHY*






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