Glyma04g03720 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03720

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2727684
stop:	2729467
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31050	AT	Annotation by Michelle Graham. TAIR10: Biotin/lipoate A/B protein ligase family \| chr4:15114345-15115443 FORWARD LENGTH=278	SoyBase	E_val: 1.00E-118	ISS
GO:0006464	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein modification process	SoyBase	N/A	ISS
GO:0009107	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipoate biosynthetic process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016415	GO-mf	Annotation by Michelle Graham. GO Molecular Function: octanoyltransferase activity	SoyBase	N/A	ISS
GO:0017118	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipoyltransferase activity	SoyBase	N/A	ISS
KOG0325	KOG	Lipoyltransferase	JGI		ISS
PTHR10993	Panther	LIPOATE-PROTEIN LIGASE B	JGI		ISS
PTHR10993:SF0	Panther		JGI		ISS
PF03099	PFAM	Biotin/lipoate A/B protein ligase family	JGI		ISS
UniRef100_B9SUW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipoate-protein ligase B, putative n=1 Tax=Ricinus communis RepID=B9SUW2_RICCO	SoyBase	E_val: 3.00E-119	ISS
UniRef100_I1JTE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g03720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g034800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03720

Limit To All Plant Sequences

>Glyma04g03720.1   sequence type=CDS   gene model=Glyma04g03720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTTGTTGGGTTCATATTCTTTGACTTCAATTCCCTCATCTCCTATATCTCTCCGCCCCCACTCCTCTGTTGCCCATGGAAGAATGGTGCAGTGTTCGCGCAGATGCGAGCTTTTCGATCTGCATCAGGAACTGATCCCTTATGACGTGGCATGGTCTTGGCAAAAAGACATCGTCAGGGAAAAGAAATCACAGATTGAGAACGAAGGAGATTGCAGCGACACACTTATTATTCTGCAACACCCTTCTGTTTACACATTGGGTACCGCTAGTACACACCACAACCTCAACTTTGACATCGAAAATCCACCCTTTCCTATTTATCGCACTGAACGCGGCGGAGAAGTTACGTTCCACGGCCCTGGCCAGCTAATTATGTACCCTATTATCAACCTCCGAAGACACAAGATGGATCTTCATTGGTACCTCCGGACCCTTGAGGAGGTCGTTATTCGTGCTCTTTCTTCAACATTTTCAATTCAGGCTTCTCGGGTAGAAGGTTTAACTGGTGTTTGGGTTGGAAACCAGAAACTGGCAGCTTTAGGTATACGAGTGGCTCATTGGATAACCTATCATGGCTTAGCGCTGAATGTCACAACGGATTTGAGCCCCTTTAAATGGGTCATCCCATGCGGAATACGTGACCGTCAAGTGGGGAGTATAAAGGGCTTGCTTAAAGAAGCTCAATCATGTATTGCTCATGGAACATCTGTTTTGCACGATTTGGATGATACCAGTCTTATTCATATTACTTACAGGTCCTTGATTGAAGAGTTCTCACGAGCGTTTCAGCTTGAGTACCATTATAAAACTATTTCTGTACCTGTTTTGTGTAAAAGGAAACCTAGCTGTTTTTCAAAAGAAACGCAGCAAAGTTGA

Predicted protein sequences of Glyma04g03720

Limit To All Plant Sequences

>Glyma04g03720.1   sequence type=predicted peptide   gene model=Glyma04g03720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILLGSYSLTSIPSSPISLRPHSSVAHGRMVQCSRRCELFDLHQELIPYDVAWSWQKDIVREKKSQIENEGDCSDTLIILQHPSVYTLGTASTHHNLNFDIENPPFPIYRTERGGEVTFHGPGQLIMYPIINLRRHKMDLHWYLRTLEEVVIRALSSTFSIQASRVEGLTGVWVGNQKLAALGIRVAHWITYHGLALNVTTDLSPFKWVIPCGIRDRQVGSIKGLLKEAQSCIAHGTSVLHDLDDTSLIHITYRSLIEEFSRAFQLEYHYKTISVPVLCKRKPSCFSKETQQS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain