Glyma04g03690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g03690

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2705077
stop:	2706138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50760	AT	Annotation by Michelle Graham. TAIR10: galacturonosyltransferase-like 2 \| chr3:18868074-18869099 FORWARD LENGTH=341	SoyBase	E_val: 6.00E-176	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0047262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity	SoyBase	N/A	ISS
PTHR13778	Panther	GLYCOSYL TRANSFERASE-RELATED	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_B9R7P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9R7P3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JTE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JTE2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03690

Paralog	Evidence	Comments
Glyma06g03770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g034600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03690

Limit To All Plant Sequences

>Glyma04g03690.1   sequence type=CDS   gene model=Glyma04g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCAAGTCAAGAAGACTAGAAGCAGAAGCAGGAGCACTGGTCTTATTCTTTCTCATTTTGTCATCGTCATCTTCTTCCAATTACGCCAAACCAAGCACCATCATTCATCAATTCAAGGAAGCCCCCGAATTCTACAACTCCCCAGAATGCGCCTCCCTCACCCACAGCAGCGACAGCTACATATGTTCGGAGGAAGCGGTACACGTGGCAATGACGCTGGACACTACATACATCCGAGGATCCATGGCGGCGATCCTCTCGGTCATCCAACACTCGTCGTGCCCGCAGAACACATTCTTCCACTTCGTCTGCTCCTCTAGCGCGTCCCTCCTACGCGCCGCGATCTCCCACTCATTCCCTTACCTCAACTTCCACCTCTACACCTTCGACGACTCCCAGGTCTCGGGCCTCATCTCCACCTCAATCCGCTCCGCACTGGATTGCCCCTTAAACTACGCGCGCTCCTACTTGCCCAGCCTCCTACCCCTCTGCGTGCGGCGCGTGGTGTACCTGGACTCCGACCTAATCCTCGTCGACGACATTGCCAAGCTGGCAGCCACACCACTAGGCGAAAACACGGTCCTGGCAGCCCCCGAATACTGCAACGCCAACTTCACCTCGTACTTCACCCCAACGTTCTGGTCCAACCCTTCGCTGTCTCTCACGTTCGCGGATAGGAGGCCGTGCTACTTCAACACGGGGGTTATGGTCATCGATTTGGAGCGGTGGCGGGAGGGGGATTACACCACCAAAATCCAGGAGTGGATGGAGCTGCAGAAGAGAATGAGAATCTATGACTTGGGTTCTCTGCCGCCGTTTTTGCTTGTCTTTGCTGGGAACATTGCTTCCGTGGATCATAGGTGGAACCAGCACGGCCTCGGTGGTGATAATTTTCGTGGCCTTTGCAGAGATCTGCACCCTGGTCCTGTTAGTCTCTTGCATTGGAGTGGGAAAGGTAAACCGTGGGTTCGGTTGGACGCTAATAGGCCTTGCCCTTTGGATGCGCTTTGGGCACCCTATGATCTATTGAACACACCCTTCTCTTTGGATTCTTGA

Predicted protein sequences of Glyma04g03690

Limit To All Plant Sequences

>Glyma04g03690.1   sequence type=predicted peptide   gene model=Glyma04g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFKSRRLEAEAGALVLFFLILSSSSSSNYAKPSTIIHQFKEAPEFYNSPECASLTHSSDSYICSEEAVHVAMTLDTTYIRGSMAAILSVIQHSSCPQNTFFHFVCSSSASLLRAAISHSFPYLNFHLYTFDDSQVSGLISTSIRSALDCPLNYARSYLPSLLPLCVRRVVYLDSDLILVDDIAKLAATPLGENTVLAAPEYCNANFTSYFTPTFWSNPSLSLTFADRRPCYFNTGVMVIDLERWREGDYTTKIQEWMELQKRMRIYDLGSLPPFLLVFAGNIASVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLNTPFSLDS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain