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Report for Sequence Feature Glyma04g03680

Feature Type:gene_model
Chromosome:Gm04
Start:2695780
stop:2697788
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g03680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19310AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:6676424-6677104 REVERSE LENGTH=226 SoyBaseE_val: 7.00E-84ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0823 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR12313Panther RNF5 JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9R7P4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rnf5, putative n=1 Tax=Ricinus communis RepID=B9R7P4_RICCO SoyBaseE_val: 6.00E-112ISS
UniRef100_I1JTE1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTE1_SOYBN SoyBaseE_val: 4.00E-169ISS

Expression Patterns of Glyma04g03680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03680
ParalogEvidenceComments
Glyma06g03760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g034500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g03680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g03680
>Glyma04g03680.1   sequence type=CDS   gene model=Glyma04g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTGGGTTTGGGGAATCAACAGGGAGATCACCCCCAAGCCCTTCCTACTTCAACAACAATAATAACAATGATGCTGCCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGACCCGATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCCTGTCTTTACAAATGGCTTCACTTTCACTCACAATCACGAGAATGCCCGGTGTGCAAGGCCCTCGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGTCGTCGACTGATCCAAGATCAAAATCTATTCCGGGCGATAACATCCCGCATCGTCCGGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGGGGATTTGCGCCACCGCCGATGGCAACAACAAGATTTGGGAATTTTGCATTGTCCGCAGCTTTTGGTGGTTTTATACCATCCTTATTCAACTTTCAGTTGCATGGGTTTCATGATGCTGCCATGTATGGGGGAGGGGCTGGTTTTCCTCATGGATTTGCCAATACATTTCATGGTGTCCATGCTCATGGATTCCCTCTGCGCACCCATCAAGGGCAACAAGATTATTATTTGAAGAAGCTTCTTCTATTTGTTGTTTTGTGTGTTGTTCTTGCTTTTATATGGCAATAG
Predicted protein sequences of Glyma04g03680
>Glyma04g03680.1   sequence type=predicted peptide   gene model=Glyma04g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASGFGESTGRSPPSPSYFNNNNNNDAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKSSTDPRSKSIPGDNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFAPPPMATTRFGNFALSAAFGGFIPSLFNFQLHGFHDAAMYGGGAGFPHGFANTFHGVHAHGFPLRTHQGQQDYYLKKLLLFVVLCVVLAFIWQ*






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