Report for Sequence Feature Glyma04g03630
Feature Type: gene_model
Chromosome: Gm04
Start: 2656591
stop: 2661622
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g03630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G19330 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:6680824-6683290 REVERSE LENGTH=
SoyBase E_val: 9.00E-110 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR13286 Panther
SAP30
JGI ISS
PTHR13286:SF4 Panther
SUBFAMILY NOT NAMED
JGI ISS
UniRef100_I1JTD7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTD7_SOYBN
SoyBase E_val: 2.00E-163 ISS
UniRef100_Q9LN65 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F18O14.5 n=1 Tax=Arabidopsis thaliana RepID=Q9LN65_ARATH
SoyBase E_val: 4.00E-107 ISS
Expression Patterns of Glyma04g03630
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g03630
Paralog Evidence Comments
Glyma06g03720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g03630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g034000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g03630
Coding sequences of Glyma04g03630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g03630.1 sequence type=CDS gene model=Glyma04g03630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTAGAGGCAATGGAAAGTTCGGTCAATGGTGGCTTCTCCCATTTGCAGAGCTGTGGAGATAGTAGCGAAGAAGAGTTATCGGTGCTTCCTCGTCACACCAAAGTTGTCGTAACCGGAAATAACCGCACCAAATCGGTGCTCGTTGGTCTTCAAGGTGTCGTTAAGAAAGCCGTTGGACTAGGCGGATGGCATTGGCTGGTTCTTACAAATGGTATTGAAGTTAAGCTACAAAGGAATGCTCTTAGCGTGATTGAAGCACCCACCGGTAATGAGGAAGACGATGACCTTGAGTTTGAAAATATGCCGTGGAATGGATCAGATATGGCATCGGACGACACACACAAGTTCCACAAGTCGAGGCATAGAATGCATAGAACATTGGGATCATCTCACAAAACCACGAGTAGGTCCTTCTCTGCCGATTCACAGTCAAAGGGGTCCGTTTCTATGCCGCTTCATGGCTCCACGAAGGTGGACTTGAGCAAACTTGAAATGGCTGCACTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCGTTCCCAAACCCATCAAAAGAGCAGCTAGTAGACGTTGTTCAGAGGCATTTCATGTCGCAGCAAATGGACGAATTGCAGGTGATTGTGGGATTTGTCCAAGCTGCAAAGAGGCTTAAGACAGTGTGGAAATGA
Predicted protein sequences of Glyma04g03630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g03630.1 sequence type=predicted peptide gene model=Glyma04g03630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLEAMESSVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDMASDDTHKFHKSRHRMHRTLGSSHKTTSRSFSADSQSKGSVSMPLHGSTKVDLSKLEMAALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVWK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
