Glyma04g03620 - SoyBase

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Report for Sequence Feature Glyma04g03620

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2647309
stop:	2650640
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19330	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr1:6680824-6683290 REVERSE LENGTH=	SoyBase	E_val: 5.00E-111	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13286	Panther	SAP30	JGI		ISS
PTHR13286:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_I1JTD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTD4_SOYBN	SoyBase	E_val: 5.00E-159	ISS
UniRef100_Q9LN65	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F18O14.5 n=1 Tax=Arabidopsis thaliana RepID=Q9LN65_ARATH	SoyBase	E_val: 2.00E-108	ISS

Expression Patterns of Glyma04g03620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03620

Paralog	Evidence	Comments
Glyma06g03710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g033900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03620

Limit To All Plant Sequences

>Glyma04g03620.2   sequence type=transcript   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTCGTCTCGTCGGGATTCATACCAAGACACCAATAAACAATACCAGTCACTCTCACTGGTTTTCTCTCTCCCTTTCTCTCTCTATCTCTGCTCTGTGCTTTTTCTCTCTGCAGAATTTCCCAAATTTCTCCACTACCCTATCTCCTCTGCTCCTGAAACTCGCACATTCTTCACCAGCAATGCACGATCTTCAATACGAATGCAATTTCGATATTTGACATCCGAGTATCAGTGCTTGAGCGGGTGAATTGGAAAATGCTAGAGGCAATGGAAAGTTCGGTCAATGGTGGCTTCTCCCATTTGCAGAGCTGTGGAGATAGTAGCGAAGAAGAGTTATCGGTGCTTCCTCGTCACACCAAAGTTGTCGTAACCGGAAATAACCGCACCAAATCGGTGCTCGTTGGTCTTCAAGGTGTCGTTAAGAAAGCCGTTGGACTAGGCGGATGGCATTGGCTGGTTCTTACAAATGGTATTGAAGTGAAGCTACAAAGGAATGCACTTAGCGTGATTGAAGCACCCACTGGTAATGAGGAAGATGATGACCTTGAGTTTGAAAATATGCCGTGGAATGGATCAGATATGGCATCGGACGACACACACAAGTCCCACAAATCGAGGCATAGAATGTATAGAACAATGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGCGATTCACAGTCGAAGGGGTCCGTTTCTATGCCTAATGGGTCCGCGGTGGACTTGAGCAAACTTGAAATGGCTGCACTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCGGTCCCAAACCCATCAAAAGAGCAGCTAGTAGACGTTGTTCAGAGGCATTTCATGTCGCAGCAAATCGACGAATTGCAGGTGATTGTGGGATTTGTCCAAGCTGCAAAGAGGCTTTAGACTGTATGCAATTGAGATGGAATGATGCGAGAAATGATATTTGAATGAAAAGTATAATTGTCTATGCTAACAAAGATAATGTATGTAATATCCACTTCCCTTCGTATTATGTAGCATATTTTATCGGTGATTTTTAACTTTCTGTTGTAGTAGTAGGTTAGTAGTTTGAGGTTATAGAGGTTCTTACTCTTTTGTAGCCACCCGGTTGTGTAGATATATATGACATTGCAACTGGATCATCAGGGAAGTCACCACCATGGCTTTCTTTTCAACTTGATTCGATGTATTACTGACTGGGGAAGTGGGTTTTCAGAGACCTTAATGTATATATATTTTAGTTTCTCCCTTTGATTCGTCTTAGATGAATTCAAGTGTTGTGTTGCTCCGGGTGGAGTAGTGGATCGTTGCTACCATCTCCAAGTTAAAGATACTGTTCAAATACTATTGAGCTAATGCTAGTG

>Glyma04g03620.3   sequence type=transcript   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTCGTCTCGTCGGGATTCATACCAAGACACCAATAAACAATACCAGTCACTCTCACTGGTTTTCTCTCTCCCTTTCTCTCTCTATCTCTGCTCTGTGCTTTTTCTCTCTGCAGAATTTCCCAAATTTCTCCACTACCCTATCTCCTCTGCTCCTGAAACTCGCACATTCTTCACCAGCAATGCACGATCTTCAATACGAATGCAATTTCGATATTTGACATCCGAGTATCAGTGCTTGAGCGGGTGAATTGGAAAATGCTAGAGGCAATGGAAAGTTCGGTCAATGGTGGCTTCTCCCATTTGCAGAGCTGTGGAGATAGTAGCGAAGAAGAGTTATCGGTGCTTCCTCGTCACACCAAAGTTGTCGTAACCGGAAATAACCGCACCAAATCGGTGCTCGTTGGTCTTCAAGGTGTCGTTAAGAAAGCCGTTGGACTAGGCGGATGGCATTGGCTGGTTCTTACAAATGGTATTGAAGTGAAGCTACAAAGGAATGCACTTAGCGTGATTGAAGCACCCACTGGTAATGAGGAAGATGATGACCTTGAGTTTGAAAATATGCCGTGGAATGGATCAGATATGGCATCGGACGACACACACAAGTCCCACAAATCGAGGCATAGAATGTATAGAACAATGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGCGATTCACAGTCGAAGGGGTCCGTTTCTATGCCTAATGGGTCCGCGAAGGTGGACTTGAGCAAACTTGAAATGGCTGCACTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCGGTCCCAAACCCATCAAAAGAGCAGCTAGTAGACGTTGTTCAGAGGCATTTCATGTCGCAGGTGATTGTGGGATTTGTCCAAGCTGCAAAGAGGCTTTAGACTGTATGCAATTGAGATGGAATGATGCGAGAAATGATATTTGAATGAAAAGTATAATTGTCTATGCTAACAAAGATAATGTATGTAATATCCACTTCCCTTCGTATTATGTAGCATATTTTATCGGTGATTTTTAACTTTCTGTTGTAGTAGTAGGTTAGTAGTTTGAGGTTATAGAGGTTCTTACTCTTTTGTAGCCACCCGGTTGTGTAGATATATATGACATTGCAACTGGATCATCAGGGAAGTCACCACCATGGCTTTCTTTTCAACTTGATTCGATGTATTACTGACTGGGGAAGTGGGTTTTCAGAGACCTTAATGTATATATATTTTAGTTTCTCCCTTTGATTCGTCTTAGATGAATTCAAGTGTTGTGTTGCTCCGGGTGGAGTAGTGGATCGTTGCTACCATCTCCAAGTTAAAGATACTGTTCAAATACTATTGAGCTAATGCTAGTG

Coding sequences of Glyma04g03620

Limit To All Plant Sequences

>Glyma04g03620.1   sequence type=CDS   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGAGGCAATGGAAAGTTCGGTCAATGGTGGCTTCTCCCATTTGCAGAGCTGTGGAGATAGTAGCGAAGAAGAGTTATCGGTGCTTCCTCGTCACACCAAAGTTGTCGTAACCGGAAATAACCGCACCAAATCGGTGCTCGTTGGTCTTCAAGGTGTCGTTAAGAAAGCCGTTGGACTAGGCGGATGGCATTGGCTGGTTCTTACAAATGGTATTGAAGTGAAGCTACAAAGGAATGCACTTAGCGTGATTGAAGCACCCACTGGTAATGAGGAAGATGATGACCTTGAGTTTGAAAATATGCCGTGGAATGGATCAGATATGGCATCGGACGACACACACAAGTCCCACAAATCGAGGCATAGAATGTATAGAACAATGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGCGATTCACAGTCGAAGGGGTCCGTTTCTATGCCTAATGGGTCCGCGAAGGTGGACTTGAGCAAACTTGAAATGGCTGCACTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCGGTCCCAAACCCATCAAAAGAGCAGCTAGTAGACGTTGTTCAGAGGCATTTCATGTCGCAGCAAATCGACGAATTGCAGGTGATTGTGGGATTTGTCCAAGCTGCAAAGAGGCTTTAG

>Glyma04g03620.2   sequence type=CDS   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGAGGCAATGGAAAGTTCGGTCAATGGTGGCTTCTCCCATTTGCAGAGCTGTGGAGATAGTAGCGAAGAAGAGTTATCGGTGCTTCCTCGTCACACCAAAGTTGTCGTAACCGGAAATAACCGCACCAAATCGGTGCTCGTTGGTCTTCAAGGTGTCGTTAAGAAAGCCGTTGGACTAGGCGGATGGCATTGGCTGGTTCTTACAAATGGTATTGAAGTGAAGCTACAAAGGAATGCACTTAGCGTGATTGAAGCACCCACTGGTAATGAGGAAGATGATGACCTTGAGTTTGAAAATATGCCGTGGAATGGATCAGATATGGCATCGGACGACACACACAAGTCCCACAAATCGAGGCATAGAATGTATAGAACAATGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGCGATTCACAGTCGAAGGGGTCCGTTTCTATGCCTAATGGGTCCGCGGTGGACTTGAGCAAACTTGAAATGGCTGCACTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCGGTCCCAAACCCATCAAAAGAGCAGCTAGTAGACGTTGTTCAGAGGCATTTCATGTCGCAGCAAATCGACGAATTGCAGGTGATTGTGGGATTTGTCCAAGCTGCAAAGAGGCTTTAG

>Glyma04g03620.3   sequence type=CDS   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGAGGCAATGGAAAGTTCGGTCAATGGTGGCTTCTCCCATTTGCAGAGCTGTGGAGATAGTAGCGAAGAAGAGTTATCGGTGCTTCCTCGTCACACCAAAGTTGTCGTAACCGGAAATAACCGCACCAAATCGGTGCTCGTTGGTCTTCAAGGTGTCGTTAAGAAAGCCGTTGGACTAGGCGGATGGCATTGGCTGGTTCTTACAAATGGTATTGAAGTGAAGCTACAAAGGAATGCACTTAGCGTGATTGAAGCACCCACTGGTAATGAGGAAGATGATGACCTTGAGTTTGAAAATATGCCGTGGAATGGATCAGATATGGCATCGGACGACACACACAAGTCCCACAAATCGAGGCATAGAATGTATAGAACAATGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGCGATTCACAGTCGAAGGGGTCCGTTTCTATGCCTAATGGGTCCGCGAAGGTGGACTTGAGCAAACTTGAAATGGCTGCACTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCGGTCCCAAACCCATCAAAAGAGCAGCTAGTAGACGTTGTTCAGAGGCATTTCATGTCGCAGGTGATTGTGGGATTTGTCCAAGCTGCAAAGAGGCTTTAG

Predicted protein sequences of Glyma04g03620

Limit To All Plant Sequences

>Glyma04g03620.1   sequence type=predicted peptide   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEAMESSVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDMASDDTHKSHKSRHRMYRTMGSSHKTMSRSFSGDSQSKGSVSMPNGSAKVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVQAAKRL*

>Glyma04g03620.2   sequence type=predicted peptide   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEAMESSVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDMASDDTHKSHKSRHRMYRTMGSSHKTMSRSFSGDSQSKGSVSMPNGSAVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVQAAKRL*

>Glyma04g03620.3   sequence type=predicted peptide   gene model=Glyma04g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEAMESSVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMPWNGSDMASDDTHKSHKSRHRMYRTMGSSHKTMSRSFSGDSQSKGSVSMPNGSAKVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQVIVGFVQAAKRL*

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