Glyma04g03610 - SoyBase

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Report for Sequence Feature Glyma04g03610

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2630227
stop:	2632308
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75080	AT	Annotation by Michelle Graham. TAIR10: Brassinosteroid signalling positive regulator (BZR1) family protein \| chr1:28185709-28187063 FORWARD LENGTH=336	SoyBase	E_val: 2.00E-116	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009742	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF05687	PFAM	Plant protein of unknown function (DUF822)	JGI		ISS
UniRef100_B9R7Q4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BRASSINAZOLE-RESISTANT 1 protein, putative n=1 Tax=Ricinus communis RepID=B9R7Q4_RICCO	SoyBase	E_val: 2.00E-128	ISS
UniRef100_I1JTD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTD3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03610

Paralog	Evidence	Comments
Glyma06g03700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g033800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03610

Limit To All Plant Sequences

>Glyma04g03610.1   sequence type=CDS   gene model=Glyma04g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCGGACGGAGCAACGTCGGCGGCGACTAACCGGAGGAAGCCGTCTTGGAGGGAGAGGGAGAACAACCGGAGGAGAGAGAGAAGAAGGAGAGCCATTTCGGCGAAGATATACTCCGGTCTTAGGGCGCAAGGGAACTACAATTTGCCCAAACACTGCGACAACAACGAAGTCTTGAAGGCTCTCTGCGCTGAAGCTGGTTGGGCCGTCGAAGAAGACGGCACCACCTATCGCAAGGGATGCAGGGCACCATATCCAGGTGATGGTGTAGGCACCTCCACCAGAAACACTCCTTTCTCATCACAAAATCCAAGTCCTCTTTCGTCGTCATTTCCGAGTCCAATTCCTTCATATCAAGTGAGCCCTTCCTCCTCCTCTTTCCCGAGCCCTTCTCGTTTGGATGCAAACAACCCTTCAAACCTGATTCCATATATTCGGCATGCGTTTCCTGCGTCTGTCCCTCCTTTAAGGATATCAAACAGCGCCCCTGTGACCCCACCCCTGTCCTCGCCAACTTCCAGAAACCCCAAACCAATTCCCACATGGGATTCCATTGCCAAAGCCTCCATGGCATCATCCTTCAACCACAGCCACCATCCTTTCTTTGCGGCTTCAGCACCGGCTAGCCCCACACACCGCCACCTTTATGCCCCACCCACTATTCCGGAGTGTGATGAGTCTGATACCTCCACTGTTGAGTCTGGTCAGTGGCTGAACTTCCAAGCATTTGCCCCTTCTGTTTCTCCTGTGCCTATCTCTCCCACCATGAATTTTATCAAACCTGTTGTGAGTCAGCAGCACAAGCACAACCTCAATCTCCCTGGTAATGGAATCCAAGAGATGAGAATTTCGGAGCCCGAATTTGCGATGCAGGTGAAGCCTTGGGTTGGGGAGAGGATTCATGAAGTGGGATTGGATGATTTGGAACTCACACTTGGAAGTGGGAAGACGCCTGCTTAG

Predicted protein sequences of Glyma04g03610

Limit To All Plant Sequences

>Glyma04g03610.1   sequence type=predicted peptide   gene model=Glyma04g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSDGATSAATNRRKPSWRERENNRRRERRRRAISAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWAVEEDGTTYRKGCRAPYPGDGVGTSTRNTPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRLDANNPSNLIPYIRHAFPASVPPLRISNSAPVTPPLSSPTSRNPKPIPTWDSIAKASMASSFNHSHHPFFAASAPASPTHRHLYAPPTIPECDESDTSTVESGQWLNFQAFAPSVSPVPISPTMNFIKPVVSQQHKHNLNLPGNGIQEMRISEPEFAMQVKPWVGERIHEVGLDDLELTLGSGKTPA*

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