Glyma04g03600 - SoyBase

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Report for Sequence Feature Glyma04g03600

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2626253
stop:	2629677
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75090	AT	Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein \| chr1:28187647-28189612 REVERSE LENGTH=329	SoyBase	E_val: 3.00E-111	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006284	GO-bp	Annotation by Michelle Graham. GO Biological Process: base-excision repair	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-3-methyladenine glycosylase activity	SoyBase	N/A	ISS
PF03352	PFAM	Methyladenine glycosylase	JGI		ISS
UniRef100_B9R7Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9R7Q5_RICCO	SoyBase	E_val: 2.00E-119	ISS
UniRef100_I1JTD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTD2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03600

Paralog	Evidence	Comments
Glyma06g03690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g033700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03600

Limit To All Plant Sequences

>Glyma04g03600.1   sequence type=CDS   gene model=Glyma04g03600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTTTGCCACCAAGCTTCCACCGGCTCCGGAACCGCCAGCTATCTTGAAACCTGCCGGAAACAGAGTAACCGTTTCCCAAGAGCCGAAACAGAAGAAGAAGGAGAACAGCGTGAAGACCAGTCCACAGCGTCCCCCGCAAATTCTGAACACCGTTGTGCAAAGCAACGTGTCTTTGGACAGCACGTGTTCCTCAGATAGCAATTCATCAACCAAAAAGGTGAAGCCCGCAACCGCAACTGTGGCGAGTAGGAGAAACGTGAAGCGTAACGGGTTTAAGCCGGTAAGGGTTGTGCCAGACGCCGTCGATGTAGCAACAGTGTTGCCGCCTCTTAAGAGATGTGAATGGATCACTCCAAATTCTGACCCCCTTTACACTGCTTTCCACGATGAAGAATGGGGTGTTCCAGTTGATGATGATAGGAAGCTATTTGAGCTTCTAGTCTTTTCACAAGCATTGGCAGAACACCGTTGGCCAGCAATCCTTAACCAGAGAGACATATTCAGGAAGCTTTTTGAAAATTTTGAACCATCATCAGTTGCACAGTTTACTGAGAAGAAATTGCTAACACTGAAAATAAACGGCAACTCATTGTTATCAGAACCAAAGCTCCGTGCCATTGTGGAAAATGCTAAACAATTACTTAAGGTTCAGCAGGAGTTTAGTTCATTCAGCAATTACTGCTGGAGATTTGTTAACCACAAACCGATAAGAAATGAATTCAGATATGGACGTCAAGTACCCGTGAAGACTCCGAAAGCTGAAGTGATTAGCAAGGACATGATGCGTAGAGGTTTCCAATGTGTGGGACCAACAGTAGTTTATTCGTTCATGCAAGTAGCAGGCCTCGTTAATGACCACCTATTAACATGCTTCAAGCACCACAAATGCAAAGTGACAACCAAAAACGAATTTAAAACTGAGGTTAAGGAGAACAATGAAACTTCGGAGATGACAATAAACAATGACCGAAGGTCGTTTAATTGA

Predicted protein sequences of Glyma04g03600

Limit To All Plant Sequences

>Glyma04g03600.1   sequence type=predicted peptide   gene model=Glyma04g03600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFATKLPPAPEPPAILKPAGNRVTVSQEPKQKKKENSVKTSPQRPPQILNTVVQSNVSLDSTCSSDSNSSTKKVKPATATVASRRNVKRNGFKPVRVVPDAVDVATVLPPLKRCEWITPNSDPLYTAFHDEEWGVPVDDDRKLFELLVFSQALAEHRWPAILNQRDIFRKLFENFEPSSVAQFTEKKLLTLKINGNSLLSEPKLRAIVENAKQLLKVQQEFSSFSNYCWRFVNHKPIRNEFRYGRQVPVKTPKAEVISKDMMRRGFQCVGPTVVYSFMQVAGLVNDHLLTCFKHHKCKVTTKNEFKTEVKENNETSEMTINNDRRSFN*

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