Glyma04g03590 - SoyBase

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Report for Sequence Feature Glyma04g03590

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2617084
stop:	2623589
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80950	AT	Annotation by Michelle Graham. TAIR10: Phospholipid/glycerol acyltransferase family protein \| chr1:30412653-30414935 REVERSE LENGTH=398	SoyBase	E_val: 0	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
KOG4666	KOG	Predicted phosphate acyltransferase, contains PlsC domain	JGI		ISS
PTHR23063	Panther	ACETYLTRANSFERASE-RELATED	JGI		ISS
PF01553	PFAM	Acyltransferase	JGI		ISS
UniRef100_G7KQU5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Medicago truncatula RepID=G7KQU5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JTC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTC9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03590

Paralog	Evidence	Comments
Glyma06g03680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g033600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g03590

Limit To All Plant Sequences

>Glyma04g03590.2   sequence type=transcript   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCATTTCATGAAAAACAAAACAAAAAAAAGAAAGAACCTGACCCAGGATGAGGATCGCGTGAGCACTCCTCTTCAGATCCGCACAAGCATTGCATATCAAATCAAGCATCCTGTTCCTTATCTCTGTCTCTGCATTTCCCTTCCTTCTTCTTCTCTCTCTCTCTAAAACCCTAATTCTATACATGGAAGGGAAATCTCAAATCTAATGACTAATTAATTAATCCATCGATCAAGCATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAATTCATCGGATTCGTGGTCTGTATATTCATTGTATGGTTCCATTATTTATCAGGAAAGAAAAAGTAAATTAATATAGAAAATTCTGTGCAGAACAAGTATTCATACTTGAAAATGTATTTATCTGATAATTGTCTCTAGAGCATTAACGGATTTCTGAGCAGGGTTCAATGTATCTATATTTTTGGTCATCTTGTAGGGTCAATAGG

>Glyma04g03590.3   sequence type=transcript   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGTGCATTTCATGAAAAACAAAACAAAAAAAAGAAAGAACCTGACCCAGGATGAGGATCGCGTGAGCACTCCTCTTCAGATCCGCACAAGCATTGCATATCAAATCAAGCATCCTGTTCCTTATCTCTGTCTCTGCATTTCCCTTCCTTCTTCTTCTCTCTCTCTCTAAAACCCTAATTCTATACATGGAAGGGAAATCTCAAATCTAATGACTAATTAATTAATCCATCGATCAAGCATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGAAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAATTCATCGGATTCGTGGTCTGTATATTCATTGTATGGTTCCATTATTTATCAGGAAAGAAAAAGTAAATTAATATAGAAAATTCTGTGCAGAACAAGTATTCATACTTGAAAATGTATTTATCTGATAATTGTCTCTAGAGCATTAACGGATTTCTGAGCAGGGTTCAATGTATCTATATTTTTGGTCATCTTGTAGGGTCAATAGGATCCACTTCAATATAGGGTGTTACAAAATATGATTTCCGATTCTTGTTATTATTCAATGTTTGTTGCATTGGGTAGAACCAGTCAGGCGGCATTTTGTTGTGGGTTCTGACTTCTGATGAGATGAGGAACAAAGCCACTAACGAACAGTAAGACTCCTTAAAAGGAGAATATCAACACCGACATCCAGAGTGCAATTTTGTAACAGCTATGAATTTAATCTGGACAAAGCTGCAATTTCGTACTAGAGCAATTTTAATGCAGTCAATGTTGATTCTTAAAAGTGAACTTGAAAATGTTATTGGAGCAAATAAAAA

Coding sequences of Glyma04g03590

Limit To All Plant Sequences

>Glyma04g03590.1   sequence type=CDS   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGAAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTAATAATAGCCTGCCTAGTGTTTTGCATCAGAAAGACGAATGA

>Glyma04g03590.2   sequence type=CDS   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAA

>Glyma04g03590.3   sequence type=CDS   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGAAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAA

Predicted protein sequences of Glyma04g03590

Limit To All Plant Sequences

>Glyma04g03590.1   sequence type=predicted peptide   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESELKDLNSKPPNGNGNSVRDDRPLLKPEPPVSADSIADMEKKFAAYVRRDVYGTMGRGELPTKEKLLLGFALVTLLPIRVVLAVTILLFYYLICRVCTLFSAPTGEEEQEDYAHMSGWRRTIIVSCGRALSRLMLFIFGFYWIPESNSASQEDKSRQPEELRRPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESRSSDFKGVSAVVTDRIREAHQNESAPLMMLFPEGTTTNGEFLLPFKTGGFLAKAPVLPVILQYHYQRFSPAWDSISGVRHVIFLLCQFVNYMEVIRLPVYHPSQQEMDDPKLYANNVRRLMATEGNLILSDIGLAEKRIYHAALNGNNSLPSVLHQKDE*

>Glyma04g03590.2   sequence type=predicted peptide   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESELKDLNSKPPNGNGNSVRDDRPLLKPEPPVSADSIADMEKKFAAYVRRDVYGTMGRGELPTKEKLLLGFALVTLLPIRVVLAVTILLFYYLICRVCTLFSAPTGEEEQEDYAHMSGWRRTIIVSCGRALSRLMLFIFGFYWIPESNSASQEDKSRQPEELRRPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESRSSDFKGVSAVVTDRIREAHQNESAPLMMLFPGTTTNGEFLLPFKTGGFLAKAPVLPVILQYHYQRFSPAWDSISGVRHVIFLLCQFVNYMEVIRLPVYHPSQQEMDDPKLYANNVRRLMATEGNLILSDIGLAEKRIYHAALNGLFSQC*

>Glyma04g03590.3   sequence type=predicted peptide   gene model=Glyma04g03590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESELKDLNSKPPNGNGNSVRDDRPLLKPEPPVSADSIADMEKKFAAYVRRDVYGTMGRGELPTKEKLLLGFALVTLLPIRVVLAVTILLFYYLICRVCTLFSAPTGEEEQEDYAHMSGWRRTIIVSCGRALSRLMLFIFGFYWIPESNSASQEDKSRQPEELRRPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESRSSDFKGVSAVVTDRIREAHQNESAPLMMLFPEGTTTNGEFLLPFKTGGFLAKAPVLPVILQYHYQRFSPAWDSISGVRHVIFLLCQFVNYMEVIRLPVYHPSQQEMDDPKLYANNVRRLMATEGNLILSDIGLAEKRIYHAALNGLFSQC*

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