SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80950 | AT | Annotation by Michelle Graham. TAIR10: Phospholipid/glycerol acyltransferase family protein | chr1:30412653-30414935 REVERSE LENGTH=398 | SoyBase | E_val: 0 | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| KOG4666 | KOG | Predicted phosphate acyltransferase, contains PlsC domain | JGI | ISS | |
| PTHR23063 | Panther | ACETYLTRANSFERASE-RELATED | JGI | ISS | |
| PF01553 | PFAM | Acyltransferase | JGI | ISS | |
| UniRef100_G7KQU5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Medicago truncatula RepID=G7KQU5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JTC9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JTC9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g03590 not represented in the dataset |
Glyma04g03590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g03680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g033600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g03590.2 sequence type=transcript gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGCATTTCATGAAAAACAAAACAAAAAAAAGAAAGAACCTGACCCAGGATGAGGATCGCGTGAGCACTCCTCTTCAGATCCGCACAAGCATTGCATATCAAATCAAGCATCCTGTTCCTTATCTCTGTCTCTGCATTTCCCTTCCTTCTTCTTCTCTCTCTCTCTAAAACCCTAATTCTATACATGGAAGGGAAATCTCAAATCTAATGACTAATTAATTAATCCATCGATCAAGCATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAATTCATCGGATTCGTGGTCTGTATATTCATTGTATGGTTCCATTATTTATCAGGAAAGAAAAAGTAAATTAATATAGAAAATTCTGTGCAGAACAAGTATTCATACTTGAAAATGTATTTATCTGATAATTGTCTCTAGAGCATTAACGGATTTCTGAGCAGGGTTCAATGTATCTATATTTTTGGTCATCTTGTAGGGTCAATAGG >Glyma04g03590.3 sequence type=transcript gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCGTGCATTTCATGAAAAACAAAACAAAAAAAAGAAAGAACCTGACCCAGGATGAGGATCGCGTGAGCACTCCTCTTCAGATCCGCACAAGCATTGCATATCAAATCAAGCATCCTGTTCCTTATCTCTGTCTCTGCATTTCCCTTCCTTCTTCTTCTCTCTCTCTCTAAAACCCTAATTCTATACATGGAAGGGAAATCTCAAATCTAATGACTAATTAATTAATCCATCGATCAAGCATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGAAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAATTCATCGGATTCGTGGTCTGTATATTCATTGTATGGTTCCATTATTTATCAGGAAAGAAAAAGTAAATTAATATAGAAAATTCTGTGCAGAACAAGTATTCATACTTGAAAATGTATTTATCTGATAATTGTCTCTAGAGCATTAACGGATTTCTGAGCAGGGTTCAATGTATCTATATTTTTGGTCATCTTGTAGGGTCAATAGGATCCACTTCAATATAGGGTGTTACAAAATATGATTTCCGATTCTTGTTATTATTCAATGTTTGTTGCATTGGGTAGAACCAGTCAGGCGGCATTTTGTTGTGGGTTCTGACTTCTGATGAGATGAGGAACAAAGCCACTAACGAACAGTAAGACTCCTTAAAAGGAGAATATCAACACCGACATCCAGAGTGCAATTTTGTAACAGCTATGAATTTAATCTGGACAAAGCTGCAATTTCGTACTAGAGCAATTTTAATGCAGTCAATGTTGATTCTTAAAAGTGAACTTGAAAATGTTATTGGAGCAAATAAAAA
>Glyma04g03590.1 sequence type=CDS gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGAAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTAATAATAGCCTGCCTAGTGTTTTGCATCAGAAAGACGAATGA >Glyma04g03590.2 sequence type=CDS gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAA >Glyma04g03590.3 sequence type=CDS gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCCGAACTCAAAGACCTCAATTCGAAGCCGCCGAACGGCAACGGCAACAGCGTTCGCGATGACCGTCCTCTGCTGAAGCCGGAGCCTCCGGTCTCCGCCGACAGCATCGCCGATATGGAGAAGAAGTTCGCCGCTTACGTCCGCCGCGACGTGTACGGCACCATGGGACGCGGCGAGTTGCCGACCAAGGAGAAGCTCTTGCTCGGTTTCGCGTTGGTCACTCTTCTCCCCATTCGAGTCGTTCTCGCCGTCACCATATTGCTCTTTTATTACTTAATTTGTAGGGTTTGCACTCTCTTCTCTGCGCCCACTGGCGAAGAGGAACAGGAAGATTACGCTCACATGAGTGGGTGGAGGAGAACCATTATTGTTTCGTGTGGACGCGCCCTCTCCAGACTCATGCTTTTCATTTTCGGCTTTTATTGGATCCCCGAATCGAACTCTGCCTCTCAGGAAGACAAGAGTCGGCAGCCCGAAGAGTTGAGGAGACCTGGCGTAATAATTTCTAATCATGTGTCGTACTTGGATATTTTGTATCACATGTCTTCCTCATTCCCTAGTTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCGCTAGTCGGTCTCATCAGCAAGTGCCTTGGTTGTGTCTATGTTCAGCGGGAATCAAGGTCATCAGACTTCAAGGGTGTTTCAGCTGTTGTCACTGACAGAATTCGAGAAGCTCATCAGAATGAGTCTGCTCCATTAATGATGTTATTTCCAGAAGGTACAACCACAAATGGAGAGTTCCTCCTTCCATTCAAGACTGGTGGTTTTTTGGCAAAGGCACCGGTACTTCCTGTGATATTACAATATCATTACCAGAGATTTAGCCCTGCCTGGGATTCCATATCTGGAGTGCGCCATGTGATATTTCTCCTGTGTCAGTTTGTGAATTATATGGAGGTGATCCGATTACCTGTTTACCATCCTTCACAGCAGGAGATGGATGATCCCAAACTATACGCTAATAATGTTAGAAGGTTGATGGCTACTGAGGGTAATTTGATACTTTCTGATATTGGGCTAGCTGAAAAACGAATATATCACGCTGCTCTTAATGGTTTGTTTTCCCAATGCTAA
>Glyma04g03590.1 sequence type=predicted peptide gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESELKDLNSKPPNGNGNSVRDDRPLLKPEPPVSADSIADMEKKFAAYVRRDVYGTMGRGELPTKEKLLLGFALVTLLPIRVVLAVTILLFYYLICRVCTLFSAPTGEEEQEDYAHMSGWRRTIIVSCGRALSRLMLFIFGFYWIPESNSASQEDKSRQPEELRRPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESRSSDFKGVSAVVTDRIREAHQNESAPLMMLFPEGTTTNGEFLLPFKTGGFLAKAPVLPVILQYHYQRFSPAWDSISGVRHVIFLLCQFVNYMEVIRLPVYHPSQQEMDDPKLYANNVRRLMATEGNLILSDIGLAEKRIYHAALNGNNSLPSVLHQKDE* >Glyma04g03590.2 sequence type=predicted peptide gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESELKDLNSKPPNGNGNSVRDDRPLLKPEPPVSADSIADMEKKFAAYVRRDVYGTMGRGELPTKEKLLLGFALVTLLPIRVVLAVTILLFYYLICRVCTLFSAPTGEEEQEDYAHMSGWRRTIIVSCGRALSRLMLFIFGFYWIPESNSASQEDKSRQPEELRRPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESRSSDFKGVSAVVTDRIREAHQNESAPLMMLFPGTTTNGEFLLPFKTGGFLAKAPVLPVILQYHYQRFSPAWDSISGVRHVIFLLCQFVNYMEVIRLPVYHPSQQEMDDPKLYANNVRRLMATEGNLILSDIGLAEKRIYHAALNGLFSQC* >Glyma04g03590.3 sequence type=predicted peptide gene model=Glyma04g03590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESELKDLNSKPPNGNGNSVRDDRPLLKPEPPVSADSIADMEKKFAAYVRRDVYGTMGRGELPTKEKLLLGFALVTLLPIRVVLAVTILLFYYLICRVCTLFSAPTGEEEQEDYAHMSGWRRTIIVSCGRALSRLMLFIFGFYWIPESNSASQEDKSRQPEELRRPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESRSSDFKGVSAVVTDRIREAHQNESAPLMMLFPEGTTTNGEFLLPFKTGGFLAKAPVLPVILQYHYQRFSPAWDSISGVRHVIFLLCQFVNYMEVIRLPVYHPSQQEMDDPKLYANNVRRLMATEGNLILSDIGLAEKRIYHAALNGLFSQC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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