Glyma04g03581 - SoyBase

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Report for Sequence Feature Glyma04g03581

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2605971
stop:	2614388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g03581

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75100	AT	Annotation by Michelle Graham. TAIR10: J-domain protein required for chloroplast accumulation response 1 \| chr1:28191108-28193769 REVERSE LENGTH=651	SoyBase	E_val: 1.00E-76	ISS
GO:0009904	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
KOG0431	KOG	Auxilin-like protein and related proteins containing DnaJ domain	JGI		ISS
PTHR23172	Panther	AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED	JGI		ISS
PTHR23172:SF32	Panther		JGI		ISS
UniRef100_B9R7Q9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R7Q9_RICCO	SoyBase	E_val: 3.00E-124	ISS
UniRef100_UPI0002339A6B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339A6B related cluster n=1 Tax=unknown RepID=UPI0002339A6B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g03581

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g03581 not represented in the dataset	Glyma04g03581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g03581

Paralog	Evidence	Comments
Glyma06g03670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g03581 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g033500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g03581

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g03581

Limit To All Plant Sequences

>Glyma04g03581.1   sequence type=CDS   gene model=Glyma04g03581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCGGTTTTATTCTTCTCAACGAGAGAGCATTCTTTTAGGGTATAGTAATGACAATAATAATTCTCTAATTCAAGGGTCGAACTTGGAGGTTGATTTCACCGACGTGTTTGGGGGGCCGCCGCGGCGGTCGTCGGTGAATGAAGTGCGGCAGAGTGTGGGTGAGTTTAGTGAAGAGGAAAGAGGTTGGTGTAGGTGGCCGCCGGAGCGTGAGAAACCGGTGTTTGGGGAGGATAGTGGAAACCGGAGACGTAATCACAGCGACTTCTTCGATGACATATTCGGAGGGGAGGAATCAGCGAGCGTGTGTTCCACGCCAAAGAAGCGCGTTGGGGACGCTTTCGCGTTGTCCCGAGTATCCAGCCCTCTGCCTCCTGCGGCTGATCCCGTTTTTGGCTCTCTCCCTGCAACCTTCAGCCTTCCTGCCAAATTGACAAATGGAGCGGACCTTCCAACATTTGGTTCCCCCACTAGGAGTAGGAACCTCCTCAACAACATCAACGATGGCATTGTTGCTTCAAATGGATTAAAACCTTACCGACAAAGTCTTTTATCACAGGAGTTTTCAAACTCGAGCACATTTGATAAAACAGACAAAGGAAGCATTATGAAACAAGACATATCTATTAGTGAAGTTTTGCCTAGTGCTAGTAATGGCCAGTTCCATTTCTCAATATACAAATGGGCAAGTAAAGGGGTGCCAATGGTGATGCCTCTTAGGACAGAGAGAAACTCAAGGAATAAAGATAAGGCTAAACTTGAGAGATGCTCAGGTGCTAAGGAATGGATAGTCAGTGAAATTACCACACAGAATCCTATAGAATACAATAGAAAACAAGATTCCAATCAGATTGTAGAACAAATAGTTTCTGCCAAAACTCAATTAGATACATCAACCAGCCCTCAAACTGTTAGTAAAGATGTTCCTGCTAGTTCTATCTCACGTGACACTAGAGAAGTAGAATCAAGTATTCGTTCTACAAGTGATAAGAAGCTTGAGCCCAAACCATTACAGTTTCTGTTCAAAGAAAGTGATAAGAAACAAGATAATGATGAGATGATTACAAGGGAGAGAGAAGAAAACAGGATGATGAAAAGCACAAAAAAGTCGTCTGCTGTTTTTGATGTTACCGTGAATCCAATGAAACAAGAAGAAAAGGCAGTTCCCTTGAGAGATGTAGGACGTAGCAAAGCCACTTCCCAGGGTTCGGTAAGCTTAGGCGAAAATTTGGGGAAAGGCCTAGTGAAAGGAAAGGTCAAAGAATTTGCTCGAATTTTCAACCAAGAAGCTGTAAATAAACCCAAAGTTGACTCCAAATCTCAACCTCAGGGTTCTACATACAAGAAGAGAGATGCTTTAAGGACAAAGAATGAAGTGGAAGCTGGTCCAGAACAACCCAAGAAGGATAACTCCGTCACAGAGACCACCAACATCTCTGCTAATAATTTGTTTCATCAAGATGATATATCAGAACCAGAAATTCCTGATATATCATTTACCGTTATTGGAGATAAAGACGAGTCCTTCCCTGGGAGTTTCATGATACAAGTATTAGCCCAAGATGAGGGTGAGGTCTTACAAACCCAAAAAAATCAAGAAATCCAAACAATTGACAACAAGATAAAACAATGGTCTAAAGGGAAGGAAGGAAACATACGCTCCCTGCTATCGACATTACAATATGTACTTTGGCCGGAGTGCGGATGGAAGCCTGTGCCTCTTGTTGATATAATTGAAGGGAACGCAGTTAAAAGATCTTATCAAAGAGCTTTACTCTGTCTGCATCCAGACAAGTTGCAACAAAAGGGTGCTTCTTCAGACCAAAAATATATTGCAGAAAAAGTTTTTGATATTTTACAGGAGGCATGGACTCAATTCAATATGCTCGGTGCACTCTAA

Predicted protein sequences of Glyma04g03581

Limit To All Plant Sequences

>Glyma04g03581.1   sequence type=predicted peptide   gene model=Glyma04g03581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERFYSSQRESILLGYSNDNNNSLIQGSNLEVDFTDVFGGPPRRSSVNEVRQSVGEFSEEERGWCRWPPEREKPVFGEDSGNRRRNHSDFFDDIFGGEESASVCSTPKKRVGDAFALSRVSSPLPPAADPVFGSLPATFSLPAKLTNGADLPTFGSPTRSRNLLNNINDGIVASNGLKPYRQSLLSQEFSNSSTFDKTDKGSIMKQDISISEVLPSASNGQFHFSIYKWASKGVPMVMPLRTERNSRNKDKAKLERCSGAKEWIVSEITTQNPIEYNRKQDSNQIVEQIVSAKTQLDTSTSPQTVSKDVPASSISRDTREVESSIRSTSDKKLEPKPLQFLFKESDKKQDNDEMITREREENRMMKSTKKSSAVFDVTVNPMKQEEKAVPLRDVGRSKATSQGSVSLGENLGKGLVKGKVKEFARIFNQEAVNKPKVDSKSQPQGSTYKKRDALRTKNEVEAGPEQPKKDNSVTETTNISANNLFHQDDISEPEIPDISFTVIGDKDESFPGSFMIQVLAQDEGEVLQTQKNQEIQTIDNKIKQWSKGKEGNIRSLLSTLQYVLWPECGWKPVPLVDIIEGNAVKRSYQRALLCLHPDKLQQKGASSDQKYIAEKVFDILQEAWTQFNMLGAL*

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